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Cleanup temporary files

enhancementNew feature or requestNew feature or request

Status: Open.

#111 In apetkau/genomics-data-index;

· apetkau opened on Nov 9, 2021

Fix incorrect unknown amino-acid level HGVS features

bugSomething isn't workingSomething isn't working

variant/mutationVariant/mutation based analysisVariant/mutation based analysis

Status: Open.

#102 In apetkau/genomics-data-index;

· apetkau opened on Aug 26, 2021

Fix restoring original MLST sample names

bugSomething isn't workingSomething isn't working

mlstMLST analysisMLST analysis

Status: Open.

#98 In apetkau/genomics-data-index;

· apetkau opened on Aug 21, 2021

More tests for building tree

enhancementNew feature or requestNew feature or request

variant/mutationVariant/mutation based analysisVariant/mutation based analysis

Status: Open.

#94 In apetkau/genomics-data-index;

· apetkau opened on Aug 18, 2021

Use existing reference sequence databases (seqrepo and snpeff)

enhancementNew feature or requestNew feature or request

variant/mutationVariant/mutation based analysisVariant/mutation based analysis

Status: Open.

#90 In apetkau/genomics-data-index;

· apetkau opened on Aug 11, 2021

Look into different representation of sets of identifiers in database

data modelThe internal data model of the application.The internal data model of the application.

Status: Open.

#82 In apetkau/genomics-data-index;

· apetkau opened on Jul 29, 2021

Add prefix to internal database ids

data modelThe internal data model of the application.The internal data model of the application.

Status: Open.

#81 In apetkau/genomics-data-index;

· apetkau opened on Jul 29, 2021

Add tests for finding unknown sample sets by hgvs id

variant/mutationVariant/mutation based analysisVariant/mutation based analysis

Status: Open.

#77 In apetkau/genomics-data-index;

· apetkau opened on Jul 28, 2021

Additional tests for mutations with same names

variant/mutationVariant/mutation based analysisVariant/mutation based analysis

Status: Open.

#76 In apetkau/genomics-data-index;

· apetkau opened on Jul 28, 2021

Implement a SequenceTyper

enhancementNew feature or requestNew feature or request

kmerKmer based analysisKmer based analysis

mlstMLST analysisMLST analysis

variant/mutationVariant/mutation based analysisVariant/mutation based analysis

Status: Open.

#75 In apetkau/genomics-data-index;

· apetkau opened on Jul 27, 2021

Implement query language in command-line interface

enhancementNew feature or requestNew feature or request

Status: Open.

#74 In apetkau/genomics-data-index;

· apetkau opened on Jul 27, 2021

Combine together SNVs into MNVs for assemblies

variant/mutationVariant/mutation based analysisVariant/mutation based analysis

Status: Open.

#71 In apetkau/genomics-data-index;

· apetkau opened on Jul 24, 2021