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Coding
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Coding
25 followers · 48 following

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Achievement: Pull Sharkx2Achievement: Pair ExtraordinaireAchievement: Quickdraw

Achievements

Achievement: Pull Sharkx2Achievement: Pair ExtraordinaireAchievement: Quickdraw

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adiezsanchez/README.md

👋 Hi, I'm Alberto Díez Sánchez, PhD

Computational Scientist specializing in AI-driven analysis of biological data, single-cell phenotyping, high-content screening, and bioimage analysis.

My work sits at the intersection of perturbation biology, computer vision, machine learning, and high-performance computing, where I develop scalable methods to quantify cellular responses and extract biologically meaningful phenotypes from large-scale microscopy datasets.

🔬 Research Interests

  • AI/ML for biological and biomedical data
  • Single-cell analysis and phenotypic profiling
  • High-content screening and perturbation assays
  • Representation learning and foundation models
  • Computer vision for microscopy
  • Multi-modal biological data integration
  • Reproducible scientific computing and HPC workflows

🛠️ Technologies

  • Python
  • PyTorch
  • TensorFlow
  • Scikit-learn
  • Nextflow
  • Slurm
  • CUDA / OpenCL
  • Docker
  • Git

🚀 Current Focus

Developing AI-powered workflows for large-scale microscopy analysis, enabling researchers to leverage GPU and HPC infrastructure for scalable, reproducible biological discovery.

📫 Contact

Pinned Loading

  1. shreyag_ibd_orgs shreyag_ibd_orgs Public

    Phenotypic profiling of colon organoids in 3D. CUDA accelerated, HPC-ready pipeline.

    Jupyter Notebook

  2. lisaoya_hcs_mtb lisaoya_hcs_mtb Public

    Processing of 2D fluorescence multichannel images derived from a siRNA HCS assay. Acquired in a Nikon Crestoptics V3 Spinning Disk. Tool developed for the Molecular Mechanisms of Mycobacterial and …

    Jupyter Notebook

  3. brain_tissue_nuc_segm brain_tissue_nuc_segm Public

    Segmentation of nuclear signals in fluorescently stained mouse brain tissue sections. Segmentations performed with a fine-tuned Stardist 3D model and/or Cellpose

    Jupyter Notebook 9 2

  4. saramorg_fret_nroot saramorg_fret_nroot Public

    Analysis of Arabidopsis Thaliana roots, FRET-ratio calculation in nuclei compartment. 3D reconstruction of root structure and automatic assignment of tissue layers. Tool developed for the Functiona…

    Python 2

  5. YAP_nuclear_3D_orgs YAP_nuclear_3D_orgs Public

    3D Nuclear translocation study of YAP in Intestinal Organoids. Tool developed for the Martin-Alonso Regeneration lab.

    Jupyter Notebook 2

  6. intestinal_organoid_yolov8 intestinal_organoid_yolov8 Public

    Tools to analyze intestinal organoid imaging at the Martin-Alonso/Oudhoff lab using AI

    Jupyter Notebook 3