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Fix SLURM grid engine

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SPAdes mate-pairs tests on: pull_request

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Isolated E.coli is220

Isolated L.gasseri

Mate-pairs A.mirum

Mate-pairs L.gasseri

Nextera mate-pairs K.pneumoniae

Nextera mate-pairs R.sphaeroides

Mate-pairs S.smaragdinae quaked

SPAdes GCC & Python versions on: pull_request

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E. coli 1k run with Python3.8

E. coli 1k run with Python3.9

E. coli 1k run with Python3.10

E. coli 1k run with Python3.11

E. coli 1k run with Python3.12

metaSPAdes tests on: pull_request

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E.coli mix saves

HMP staggered Mock full

MBARC 25 150

MBARC 25 150 interlaced

MBARC 25 250

Multi-cell B.cereus TruSeq 100x

Synth64 Sub 0p2

SPAdes long-read tests on: pull_request

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Untrusted contigs E.coli is220

Untrustred contigs Geophsycobacter

PacBio A.mirum

PacBio M.ruber

PacBio+Mate-pairs A.mirum

PacBio+Mate-pairs M.ruber

PacBio P4 E.coli is200

PacBio P.heparinus

Trusted contigs K.pneumoniae

Trusted contigs P.stipitis

Trusted contigs S.smaragdinae quaked

SPAdes IonTorrent datasets tests on: pull_request

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IonTorrent E.coli

IonTorrent+PacBio E.coli

SPAdes basic tests on: pull_request

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🍎 Build SPAdes for macOS (macos-13, x86_64)

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🚬 E. coli 1k smoke checks

SPAdes unittests

🚬 E. coli 1k smoke checks (MPI)

🚬 E. coli 1k smoke checks (macos-13, x86_64)

🚬 E. coli 1k smoke checks (macos-14, arm64)

SPAdes unittests (macos-13, x86_64)

SPAdes unittests (macos-14, arm64)

SPAdes single-cell datasets tests on: pull_request

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Single-cell E.coli deeptrench

Single-cell E.coli JGI lane 7

Single-cell E.coli JGI lane 7 2 libraries

Single-cell+contigs E.coli UCSD lane 1

Single-cell P.heparinus JGI lane 7

Single-cell M.ruber JGI lane 9

Single-cell P.marinus

Single-cell+PacBio TM6

Single-cell single-end P.marinus

SPAdes usecases on: pull_request

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Multicell B.cereus TruSeq 100x

Nextera L.monocytogenes

Contigs E.coli JGI lane 7

Full run M.ruber JGI lane 9

IonTorrent E.coli K12

Mate-pairs B.faecium

Single-cell P.heparinus JGI lane 7

plasmidSPAdes C.callunae

Single reads E.coli Deeptrench

PacBio M.ruber

Saves E.coli 100K

Saves E.coli UCSD lane 1

metaSPAdes JGI 150

metaviralSPAdes ERR525599

SPAdes isolated datasets tests on: pull_request

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Isolated E.coli is220

Isolated L.gasseri

Multicell E.coli is200

Multicell E.coli is200+is480

Multicell E.coli TruSeq 100x

Multicell P.Stipitis

Single-end B.cereus

Single-end L.gasseri

rnaSPAdes tests on: pull_request

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Z.mays

Z.mays strand specific

C.elegans

C.elegans hybrid mode

C.elegans full-length reads

SPAdes SRA input on: pull_request

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SRA C.trachomatis

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