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1. image_readers image_readers Public

   Collection of different scripts designed to open different types of raw image formats en convert them into usable images. Each directory is a different raw format and is a separate project.

   Python

2. sifrimlab/ST-nextflow-pipeline sifrimlab/ST-nextflow-pipeline Public

   This repository contains the entire codebase necessary to pilot STAPLE, an automated end-to-end pipeline that processes Spatial Transcriptomics datasets.

   Python 1 1

3. sifrimlab/enteric_neuron_tools sifrimlab/enteric_neuron_tools Public

   This repository contains both a script and a gui to process .czi images and count and segment enteric neurons that are visualized on one of the channels.

   Python

4. MOFA2 MOFA2 Public

   Integrated Bioinformatics Project

   R 1 1

5. Southpaw_advantage Southpaw_advantage Public

   Small applied multivariate statistics project in which I take pitching data of MLB top players and try to find a grouping structure for lefties/righties based on pitch quality metrics

   R