BAP treated hESC (day 8) snRNAseq data analyses

Tuteja Lab, Iowa State University, Ames IA-50011

Documentation

The Wiki for the entire analyses is provided in this R-markdown file data-analyses-html.Rmd. The rendered html file is accessible on this link: tuteja-lab.github.io/BAP.hESC.d8_snRNAseq.

Data availability

Raw datasets are available for download upon publication from NCBI GEO GSE171768

Other datasets

1. Cerebro image file to interactively explore the results is available here Cerebro_BAPd8_O2Level.crb
2. R object file (in rds format) is available here bapd8.integrated.rds

Contacts

1. Project related questions: Geetu Tuteja
2. Scripts and workflow related questions: please open an issue here on GitHub.

Publication

If you use the scripts from this repository in your research, please cite this publication:

Teka Khan, Arun S. Seetharam, Jie Zhou, Nathan J. Bivens, Danny J. Schust, Toshihiko Ezashi, Geetu Tuteja, and R. Michael Roberts. "Single nucleus RNA sequence (snRNAseq) analysis of the spectrum of trophoblast lineages generated from human pluripotent stem cells in vitro." Frontiers in Cell and Developmental Biology 9: 1881, 2021.