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Update schemas to v1.0.2#3

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alan-walsh wants to merge 3 commits into
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feature/schema-v1-0-2-updates
Open

Update schemas to v1.0.2#3
alan-walsh wants to merge 3 commits into
mainfrom
feature/schema-v1-0-2-updates

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@alan-walsh

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Summary

  • Add v1.0.2 schema fields supplied in the updated schema package.
  • Regenerate schema.json and set dictionary version metadata to 1.0.2.

Changes

  • Add tissue_type to aliquot.
  • Add orien_specimen_id to follow_up.
  • Add biospecimen_type to molecular_test.

Validation

  • Ran quay.io/rds/dictutils: 20 passed.
  • Parsed schema.json and confirmed version=1.0.2.
  • Confirmed the three compiled properties are present in schema.json.
  • Ran git diff --check.

Copilot AI review requested due to automatic review settings June 23, 2026 22:40

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Pull request overview

Updates the dictionary schemas and compiled schema.json to v1.0.2, incorporating new fields from the updated schema package.

Changes:

  • Bumped dictionary metadata in schema.json to _dict_version: 1.0.2 (and updated commit hash).
  • Added tissue_type to aliquot, orien_specimen_id to follow_up, and biospecimen_type to molecular_test.
  • Regenerated schema.json to include the new compiled properties.

Reviewed changes

Copilot reviewed 4 out of 4 changed files in this pull request and generated 4 comments.

File Description
schema.json Updates dictionary version metadata and adds compiled schema properties for the new fields.
gdcdictionary/schemas/molecular_test.yaml Adds biospecimen_type field definition.
gdcdictionary/schemas/follow_up.yaml Adds orien_specimen_id field definition.
gdcdictionary/schemas/aliquot.yaml Adds tissue_type field definition.

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Comment thread gdcdictionary/schemas/aliquot.yaml Outdated
Comment thread schema.json Outdated
Comment thread gdcdictionary/schemas/molecular_test.yaml
Comment on lines +760 to +762
orien_specimen_id:
description: orien_specimen_id.
type:
alan-walsh and others added 2 commits June 24, 2026 08:57
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
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3 participants