SmoothForge · danielward27 · Sep 3, 2025 · Sep 2, 2025 · Sep 2, 2025 · Sep 2, 2025
diff --git a/docs/api/gam.md b/docs/api/gam.md
@@ -13,15 +13,13 @@ GAM model types from ``pymgcv.gam``.
 
 ::: pymgcv.gam.GAM
     options:
-        inherited_members:
-          - __init__
         heading_level: 2
+        inherited_members: __init__
 
 ::: pymgcv.gam.BAM
     options:
         heading_level: 2
-        inherited_members:
-          - __init__
+        inherited_members: __init__
 
 ::: pymgcv.gam.FitState
     options:

diff --git a/docs/api/plot.md b/docs/api/plot.md
@@ -1,17 +1,21 @@
 # Plotting
 
 `pymgcv.plot` provides plotting utilities for visualizing GAM models. Plotting is performed using matplotlib.
+Across the package and examples, we use the import convention
+```python
+import pymgcv.plot as gplt
+```
 
-- For an overall plot of the partial effects of a gam model, use [`plot_gam`][pymgcv.plot.plot_gam].
+- For an overall plot of the partial effects of a gam model, use [`plot`][pymgcv.plot.plot].
 - For more fine control over the plotting, specific terms can be plotted onto a single matplotlib axis, using the functions:
-    * [`plot_continuous_1d`][pymgcv.plot.plot_continuous_1d]
-    * [`plot_continuous_2d`][pymgcv.plot.plot_continuous_2d]
-    * [`plot_categorical`][pymgcv.plot.plot_categorical]
+    * [`continuous_1d`][pymgcv.plot.continuous_1d]
+    * [`continuous_2d`][pymgcv.plot.continuous_2d]
+    * [`categorical`][pymgcv.plot.categorical]
 
-::: pymgcv.plot.plot_gam
-::: pymgcv.plot.plot_continuous_1d
-::: pymgcv.plot.plot_continuous_2d
-::: pymgcv.plot.plot_categorical
-::: pymgcv.plot.plot_qq
-::: pymgcv.plot.plot_residuals_vs_linear_predictor
+::: pymgcv.plot.plot
+::: pymgcv.plot.continuous_1d
+::: pymgcv.plot.continuous_2d
+::: pymgcv.plot.categorical
+::: pymgcv.plot.qq
+::: pymgcv.plot.residuals_vs_linear_predictor
 ::: pymgcv.plot.hexbin_residuals
diff --git a/docs/examples/electricity_bam.ipynb b/docs/examples/electricity_bam.ipynb
diff --git a/docs/examples/gamlss.ipynb b/docs/examples/gamlss.ipynb
diff --git a/docs/examples/linear_functional.ipynb b/docs/examples/linear_functional.ipynb
diff --git a/docs/examples/ozone.ipynb b/docs/examples/ozone.ipynb
diff --git a/docs/examples/seasonal_co2.ipynb b/docs/examples/seasonal_co2.ipynb
diff --git a/docs/examples/smooth_by_categorical.ipynb b/docs/examples/smooth_by_categorical.ipynb
diff --git a/docs/examples/spatial_fish_eggs.ipynb b/docs/examples/spatial_fish_eggs.ipynb
diff --git a/docs/examples/supplement_vs_placebo.ipynb b/docs/examples/supplement_vs_placebo.ipynb
diff --git a/docs/index.ipynb b/docs/index.ipynb
diff --git a/docs/scripts/notebooks.sh b/docs/scripts/notebooks.sh
@@ -1,5 +1,5 @@
 #!/bin/bash
 cd "$PIXI_PROJECT_ROOT"
 find . -name "*.ipynb" -print0 | while IFS= read -r -d '' nb; do
-  jupyter nbconvert --to notebook --execute --inplace "$nb" --ExecutePreprocessor.kernel_name=pymgcv
+  jupyter nbconvert --to notebook --execute --inplace "$nb" --ExecutePreprocessor.kernel_name=pymgcv --ClearMetadataPreprocessor.enabled=True
 done
diff --git a/pymgcv/basis_functions.py b/pymgcv/basis_functions.py
@@ -86,7 +86,7 @@ class RandomEffect(AbstractBasis):
     !!! example
 
         For an example, see the
-        [supplement vs placebo example](../../examples/supplement_vs_placebo).
+        [supplement vs placebo example](../examples/supplement_vs_placebo.ipynb).
 
     """