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Pull requests: SMD-Bioinformatics-Lund/nextflow_wgs

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Pull requests list

convert params.align, params.umi, params.annotate to wf inputs status: needs testing
#439 opened Jun 13, 2026 by alkc Contributor Loading…
4 of 28 tasks
2
Convert global params to workflow inputs #1
#438 opened Jun 13, 2026 by alkc Contributor Loading…
3 of 28 tasks
1
Add CALL_AND_ANNOTATE_STRS workflow status: needs testing
#437 opened Jun 10, 2026 by alkc Contributor Loading…
15 of 33 tasks
@alkc
4
Vh/platform specific pons
#436 opened Jun 10, 2026 by ViktorHy Member Loading…
8 of 28 tasks
20
Add PED subworkflow status: needs testing status: worked on
#435 opened Jun 10, 2026 by alkc Contributor Loading…
4 of 28 tasks
3
Move QC-to-CDM steps into a dedicated QC_TO_CDM workflow status: needs testing status: ready for review status: worked on
#433 opened Jun 9, 2026 by alkc Contributor Loading…
3 of 28 tasks
1
convert params.cftr to workflow input status: needs testing status: worked on
#432 opened Jun 9, 2026 by alkc Contributor • Draft
28 tasks
1
Upgrade to nextflow 25.10.0 status: on hold
#379 opened Jan 19, 2026 by alkc Contributor • Draft
7 of 27 tasks
9
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