Issues

• dependencies incompatibility

  SCCAF/sccaf#52 · Filter by author amirrade opened on Feb 24, 2025

• install and read problem : SCCAF conflicts with new version of scanpy and anndata package and as I installed old version of scanpy it couldn't read my processed h5ad file

  SCCAF/sccaf#51 · Filter by author Fateme2112 opened on Jun 18, 2024

• Pandas cannot sent attribute

  SCCAF/sccaf#50 · Filter by author zsfrbkv opened on Aug 29, 2023
  1

• Scanpy==1.4.6 dependency while working with SCCAF

  SCCAF/sccaf#48 · Filter by author AkilaRanjith opened on Jun 29, 2022

• Outdated scanpy dependency

  SCCAF/sccaf#47 · Filter by author maxim-h opened on Mar 16, 2022
  1

• NameError: name 'default_26' is not defined

  SCCAF/sccaf#45 · Filter by author cystone opened on Apr 6, 2021
  1

• How to collect and plot the accuracies of all SCCAF rounds

  SCCAF/sccaf#42 · Filter by author Puriney opened on Jan 21, 2021

• problem with SCCAF installation using conda

  SCCAF/sccaf#41 · Filter by author mkrzak opened on Nov 30, 2020
  1

• IndexError when performing SCCAF cluster analysis

  SCCAF/sccaf#40 · Filter by author leomorelli opened on Nov 13, 2020

• error: write h5 file fail

  SCCAF/sccaf#39 · Filter by author zznx opened on Oct 12, 2020
  1

• Citation

  SCCAF/sccaf#38 · Filter by author cbiagii opened on Oct 6, 2020

• Using the commands in 'Parallel run of assessments' could raise 'FileNotFoundError'

  SCCAF/sccaf#37 · Filter by author lsq2 opened on Jun 30, 2020

• ValueError: At least one label specified must be in y_true

  SCCAF/sccaf#36 · Filter by author tina-roostaei opened on Jun 21, 2020
  4

• how to use original Dimension Reduction information from Seurat.

  SCCAF/sccaf#35 · Filter by author aina91 opened on Jun 7, 2020
  4

• Error when running with plot=TRUE

  SCCAF/sccaf#34 · Filter by author s2hui opened on Jun 5, 2020

• Errors when using low_res parameter to constrain optimization

  SCCAF/sccaf#33 · Filter by author s2hui opened on Jun 5, 2020
  1

• Run SCCAF "total error" in Galaxy

  SCCAF/sccaf#32 · Filter by author mariusrueve opened on May 27, 2020

• SCCAF for scATAC-seq

  SCCAF/sccaf#31 · Filter by author RegnerM2015 opened on May 27, 2020

• galaxy typos

  SCCAF/sccaf#30 · Filter by author colindaven opened on May 19, 2020

• SCCAF cli should exit with an error when no UMAP or tSNE embeddings are available

  SCCAF/sccaf#22 · Filter by author pcm32 opened on Oct 14, 2019

• On occassions, cross validation will fail because sampling picks sets belonging to a single class

  SCCAF/sccaf#20 · Filter by author pcm32 opened on Oct 10, 2019
  1

• plot_roc and gray heatmap are producing large number of matplotlib figures open warning

  SCCAF/sccaf#15 · Filter by author pcm32 opened on Oct 9, 2019