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refactor sc sds#1319

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OluwatobiOni wants to merge 10 commits into
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refactor-sds
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refactor sc sds#1319
OluwatobiOni wants to merge 10 commits into
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refactor-sds

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@OluwatobiOni

@OluwatobiOni OluwatobiOni commented May 1, 2026

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PR complete. (29/06 Edit)

  • preprod data looking good on UAT (all variables accounted for and variable types okay)
  • Needs changes from the sc-demog branch in the process_sc_all_sds.R script
  • testing is dependent on the get_sc_demog_lookup_path() in the sc-demog branch as BYOC_MODE is being passed into it as an argument. Can be tested by making the changes locally in this branch.

@OluwatobiOni OluwatobiOni added On hold Waiting for something / someone outside of our control BYOC 1a: Ready for Review 1 Refactoring completed by author (without data) labels May 1, 2026
Comment thread R/process_sc_all_sds.R Outdated
write_to_disk = TRUE
) {
process_sc_all_sds <- function(data,
sc_demog_lookup = read_file(get_sc_demog_lookup_path(BYOC_MODE = BYOC_MODE), BYOC_MODE = BYOC_MODE),

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Does read_file contain the BYOC_MODE? Just wondering if this line should look like this as i have this on the demographics PR. But i could have missed it. Thanks

Suggested change
sc_demog_lookup = read_file(get_sc_demog_lookup_path(BYOC_MODE = BYOC_MODE), BYOC_MODE = BYOC_MODE),
sc_demog_lookup = read_file(get_sc_demog_lookup_path(BYOC_MODE = BYOC_MODE)),

@Jennit07

Jennit07 commented May 6, 2026

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Reviewed 06/05/26 - just one comment from me but ready to test this when we have the data available

@Jennit07 Jennit07 added 1b: Peer Review 1 Complete First peer review completed by reviewer (without data) 1: Preprod Data Not Available Denodo data not available in preprod ready for PHS testing and removed 1a: Ready for Review 1 Refactoring completed by author (without data) labels May 11, 2026
@Jennit07 Jennit07 self-assigned this May 12, 2026
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This Pull Request is stale because it has been at least 30 days with no activity. It will be closed if there is no activity within 7 days.

@github-actions github-actions Bot added the Stale label Jun 15, 2026
@OluwatobiOni

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Wait for dependency, data not available.

@lizihao-anu

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#1337 (comment)

See this comment for run_id and run_date_time.

@OluwatobiOni OluwatobiOni removed On hold Waiting for something / someone outside of our control Stale 1b: Peer Review 1 Complete First peer review completed by reviewer (without data) labels Jun 29, 2026
@OluwatobiOni OluwatobiOni added 1a: Ready for Review 1 Refactoring completed by author (without data) and removed 1: Preprod Data Not Available Denodo data not available in preprod labels Jun 29, 2026
@OluwatobiOni
OluwatobiOni marked this pull request as ready for review June 29, 2026 17:04
@Jennit07 Jennit07 added 1b: Peer Review 1 Complete First peer review completed by reviewer (without data) and removed 1a: Ready for Review 1 Refactoring completed by author (without data) labels Jun 30, 2026
@LucyEmma22 LucyEmma22 added 2: Preprod Data in UAT Denodo data available in preprod and undergoing UAT and removed 1b: Ready for PHS Testing labels Jul 1, 2026
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1b: Peer Review 1 Complete First peer review completed by reviewer (without data) 2: Preprod Data in UAT Denodo data available in preprod and undergoing UAT BYOC

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4 participants