Issues

• Broken links in the docs

  PennLINC/qsiprep#1177 · Filter by author keyral opened on Oct 2, 2026

• Convert mvtc2 transforms to h5 format

  enhancement
  PennLINC/qsiprep#1097 · Filter by author tsalo opened on Aug 19, 2026

• Investigate improvements to intramodal template construction

  enhancement
  PennLINC/qsiprep#1096 · Filter by author tsalo opened on Aug 19, 2026

• Add function to check parameters after CLI parsing

  refactor
  PennLINC/qsiprep#1091 · Filter by author tsalo opened on Aug 14, 2026
  1

• Remove shoreline option in favor of tortoise

  breaking-change
  PennLINC/qsiprep#1086 · Filter by author tsalo opened on Aug 13, 2026 · 26.2.0

• Overhaul test datasets

  testing
  PennLINC/qsiprep#1082 · Filter by author tsalo opened on Aug 12, 2026 · 26.2.0

• Potential mask leakage outside DWI support causes AMICO NODDI failure in qsirecon (mean b0 = 0 voxels)

  bug
  PennLINC/qsiprep#1072 · Filter by author arovai opened on Jul 17, 2026
  2

• QSIPrep 26.0.0 Singularity image: eddy_cuda10.2 missing and DSI Studio fails with GLIBC_2.38 under --nv

  bug
  PennLINC/qsiprep#1067 · Filter by author bkossows opened on Jun 23, 2026
  5

• QSIPrep stuck at eddy - Docker (Windows)

  bug
  PennLINC/qsiprep#1052 · Filter by author Anomandaris-Purake opened on May 21, 2026
  7

• Add ability to re-use anatomical derivatives

  enhancement
  PennLINC/qsiprep#1048 · Filter by author tsalo opened on May 5, 2026

• Add SuCor susceptibility correction method

  enhancement
  PennLINC/qsiprep#1038 · Filter by author joseph-schwartz1999 opened on Mar 25, 2026
  3

• B0 Field Mapping in HTML Report

  bug
  PennLINC/qsiprep#1015 · Filter by author sofiechung opened on Dec 10, 2025

• Update boilerplate

  PennLINC/qsiprep#1010 · Filter by author araikes opened on Dec 2, 2025
  1

• Problems with 3dcalc and 3dresample?

  bug
  PennLINC/qsiprep#988 · Filter by author JohannesWiesner opened on Oct 22, 2025
  13

• FSL version not reported in CITATION.html

  bug
  PennLINC/qsiprep#981 · Filter by author joellebagautdinova opened on Oct 8, 2025
  2

• T1w-dwiref co-registration refinement with brain masks

  enhancement
  PennLINC/qsiprep#979 · Filter by author pcamach2 opened on Oct 2, 2025
  1

• Unbiased subject templates fail

  bug
  PennLINC/qsiprep#976 · Filter by author araikes opened on Sep 18, 2025
  4

• XML Memory allocation error

  bug
  PennLINC/qsiprep#973 · Filter by author l-espana opened on Aug 25, 2025
  1

• --distortion-group-merge concat fails with DimensionError while average works

  bug
  PennLINC/qsiprep#971 · Filter by author caofeizhen opened on Aug 19, 2025
  1

• Can not port nipype execution "remove_unnecessary_outputs = false"

  bug
  PennLINC/qsiprep#959 · Filter by author WilliamFCB opened on Aug 2, 2025
  8

• Better description of LSR in boilerplate

  enhancement
  PennLINC/qsiprep#955 · Filter by author mattcieslak opened on Jul 29, 2025

• Add brain volume (mm^3) to the image_qc tsv

  enhancement
  PennLINC/qsiprep#950 · Filter by author mattcieslak opened on Jun 20, 2025

• PE direction flipped when using phasediff SDC

  bug
  PennLINC/qsiprep#946 · Filter by author jhauneuro opened on May 30, 2025

• QSIPrep 1.0.1 --use-syn-sdc not work

  bug
  PennLINC/qsiprep#945 · Filter by author xlzhope2 opened on May 28, 2025

• Add support for Eddy LSR method

  enhancement
  PennLINC/qsiprep#931 · Filter by author pierre-nedelec opened on Mar 17, 2025
  1