Skip to content

Release 0.9.12 #440

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
ielis merged 25 commits into from
Dec 12, 2025
Merged

Release 0.9.12 #440

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
25 commits
Select commit Hold shift + click to select a range
df59729
Next development iteration `v0.9.12.dev0`.
ielis Aug 4, 2025
840f13e
Implement caching `GeneCoordinateService`, expose default imprecise S…
ielis Aug 4, 2025
d7f52fc
Apply formatting.
ielis Aug 4, 2025
21357c3
Use absolute path in both branches.
ielis Aug 4, 2025
9d6151a
Add debugging.
ielis Aug 4, 2025
55b6dea
Further debug.
ielis Aug 4, 2025
0e1e671
More debugging.
ielis Aug 4, 2025
7f266fd
More debugging.
ielis Aug 4, 2025
afb0734
Check one more time.
ielis Aug 4, 2025
df99738
Apply formatting.
ielis Aug 4, 2025
361e441
More debugging.
ielis Aug 4, 2025
b9fb137
Update config test.
ielis Aug 4, 2025
6cae490
Merge pull request #437 from P2GX/cache-gene-to-tx-coordinates
ielis Aug 4, 2025
a0d152b
Phenopacket store toolkit is only needed for testing.
ielis Nov 3, 2025
3ecd46e
Update Custom components section.
ielis Nov 5, 2025
2cc3c77
Add numpy compatibility notes.
ielis Nov 6, 2025
2244dfa
Remove typo.
ielis Nov 7, 2025
15ac120
Process VEP response for variants on the mitochondrial chromosome.
ielis Dec 12, 2025
3283f25
Handle refseq transcripts.
ielis Dec 12, 2025
2572b58
Regenerate caches, format code.
ielis Dec 12, 2025
739d4f5
Clear previously set env variable.
ielis Dec 12, 2025
19fbb43
Merge pull request #438 from P2GX/fix-functional-annotation-of-mt-var…
ielis Dec 12, 2025
59ef4c3
Add a TODO.
ielis Dec 12, 2025
6e55692
Merge pull request #439 from P2GX/enhance-docs
ielis Dec 12, 2025
37e4a6c
Make release `0.9.12`.
ielis Dec 12, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
7 changes: 5 additions & 2 deletions .github/workflows/python_ci.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -21,8 +21,11 @@ jobs:
python-version: ${{ matrix.python-version }}
- name: Install package
run: python3 -m pip install --editable .[test]
- name: Run pytest tests
run: MPLBACKEND=Agg GPSEA_CACHEDIR=.gpsea_ci_cachedir pytest
- name: Run tests
env:
MPLBACKEND: "Agg"
GPSEA_CACHEDIR: ".gpsea_ci_cachedir"
run: pytest

formatting:
name: Check code formatting
Expand Down
Loading