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Input for ambient argument in hashedDrops function for 10X single cell data

Status: Open.

#120 In MarioniLab/DropletUtils;

· tim-meese opened on Mar 12, 2025

emptyDropsCellRanger index out of bounds style error

Status: Open.

#109 In MarioniLab/DropletUtils;

· jamesnemesh opened on Jun 3, 2024

Add n.expected.cells estimation to emptyDropsCellRanger

Status: Open.

#88 In MarioniLab/DropletUtils;

· jashapiro opened on Jul 13, 2022

Usage between swappedDrops and chimericDrops ...

Status: Open.

#86 In MarioniLab/DropletUtils;

· drkoryjohns opened on Apr 15, 2022

using read10xMolInfo (v1.14.0 for h5 files from v1.6.1

Status: Open.

#81 In MarioniLab/DropletUtils;

· chensujun opened on Nov 9, 2021

Failing tests

Status: Open.

#76 In MarioniLab/DropletUtils;

· nileshpatra opened on Sep 27, 2021

Cannot run ambientContribMaximum for y with multiple columns

Status: Open.

#74 In MarioniLab/DropletUtils;

· mgrantpeters opened on Sep 13, 2021

How to run barcodeSwapping and ChimericReads with no h5 info?

Status: Open.

#70 In MarioniLab/DropletUtils;

· mortunco opened on Sep 1, 2021

emptyDrops BioC 3.11 vs 3.12: different results with the OSCA pbmc 4k dataset

Status: Open.

#67 In MarioniLab/DropletUtils;

· lcolladotor opened on Aug 11, 2021

current version fails to install (beachmat::whichNonZero export fail)

Status: Open.

#62 In MarioniLab/DropletUtils;

· lotard opened on May 20, 2021

swappedDrops on STARSolo output

Status: Open.

#59 In MarioniLab/DropletUtils;

· mbatiuk opened on Feb 16, 2021

Unable to install new version of DropletUtils

Status: Open.

#52 In MarioniLab/DropletUtils;

· liron27 opened on Sep 29, 2020