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Jakob Skou Pedersen Lab

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dreams dreams Public

Deep Read-level Error Model for Sequencing data

R 7

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Showing 10 of 10 repositories

miDGD Public
Predicting miRNA expression from mRNA expression using DGD.

JakobSkouPedersenLab/miDGD’s past year of commit activity

Jupyter Notebook 1 MIT 0 0 0 Updated Jun 15, 2026
miDGD_paper Public
To reproduce results from miDGD paper

JakobSkouPedersenLab/miDGD_paper’s past year of commit activity

Jupyter Notebook 0 MIT 0 0 0 Updated Jun 13, 2026
NCBS_2025 Public
NCBS 2025 — Statistical Genomics Course

JakobSkouPedersenLab/NCBS_2025’s past year of commit activity

HTML 1 0 0 0 Updated May 6, 2026
bayesReact Public
Model to evaluate the distribution of Regular Expressions (REs) across a ranked sequence lists.

JakobSkouPedersenLab/bayesReact’s past year of commit activity

R 0 GPL-3.0 0 0 0 Updated May 1, 2026
Astrid_Thesis_2025 Public
Source code, scripts and Jupyter notebooks for my thesis (June 2025)

JakobSkouPedersenLab/Astrid_Thesis_2025’s past year of commit activity

Jupyter Notebook 0 0 0 0 Updated Feb 12, 2026
chemoDetect Public
"Chemotherapy and APOBEC mutational signatures in tumor and healthy cells revealed by cell-free DNA monitoring"

JakobSkouPedersenLab/chemoDetect’s past year of commit activity

0 0 0 0 Updated Feb 11, 2026
pairbase Public
Blazingly fast calculation of consensus mismatch rates in whole genome sequenced cell-free DNA

JakobSkouPedersenLab/pairbase’s past year of commit activity

Rust 3 MIT 0 0 0 Updated Feb 5, 2026
circular_sisRNA_analysis Public
Overview of R code used for circular sisRNA analysis

JakobSkouPedersenLab/circular_sisRNA_analysis’s past year of commit activity

R 0 0 0 0 Updated Dec 11, 2024
dreams Public
Deep Read-level Error Model for Sequencing data

JakobSkouPedersenLab/dreams’s past year of commit activity

R 7 GPL-3.0 0 3 0 Updated May 24, 2024
localized_mutation_rates_analysis Public

JakobSkouPedersenLab/localized_mutation_rates_analysis’s past year of commit activity

R 0 1 0 0 Updated Aug 2, 2023

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