This repository contains preprocessing scripts used to generate the main analysis objects for single-cell RNA-seq, lipidomics, and spatial transcriptomics analyses.
The scripts are provided for peer review and reproducibility. Local file paths, access tokens, personal computer information, installation attempts, and exploratory/debugging comments have been removed.
SCI_supplementary_code/
├── README.md
├── .gitignore
├── renv_notes.md
├── docs/
│ └── input_data_structure.md
└── scripts/
├── 01_build_scRNA_seurat_object.R
├── 02_build_lipidomics_object.R
└── 03_build_spatial_seurat_object.R