estimatesoflcfunction

Shell, R, and Matlab code for our paper "Estimates of locus coeruleus function with functional magnetic resonance imaging are influenced by localization approaches and the use of multi-echo data" (Turker, Riley, Luh, Colcombe, & Swallow, 2021)

https://www.sciencedirect.com/science/article/pii/S1053811921003244

Name		Name	Last commit message	Last commit date
Latest commit History 5 Commits
EulerCharacteristics.R		EulerCharacteristics.R
LC_MvS_EulerChar.m		LC_MvS_EulerChar.m
Overlap_Peaks.R		Overlap_Peaks.R
README.md		README.md
compile_tempAttAudT_rest_PTcontrols.awk		compile_tempAttAudT_rest_PTcontrols.awk
compile_tempAttAudT_rest_ROIqualitycheck.awk		compile_tempAttAudT_rest_ROIqualitycheck.awk
compile_tempAttAudT_rest_overlap.awk		compile_tempAttAudT_rest_overlap.awk
compile_tempAttAudT_rest_tSNR.awk		compile_tempAttAudT_rest_tSNR.awk
compiled.LC_4V.seeds.awk		compiled.LC_4V.seeds.awk
rest.step1.meica.sh		rest.step1.meica.sh
rest.step2a.ME.sh		rest.step2a.ME.sh
rest.step2b.SE.sh		rest.step2b.SE.sh
rest.step2c.SE_alternative.sh		rest.step2c.SE_alternative.sh
rest.step3a.LC_volume.sh		rest.step3a.LC_volume.sh
rest.step3b.t2s.sh		rest.step3b.t2s.sh
rest.step3c.ROIdice.sh		rest.step3c.ROIdice.sh
rest.step4.onesamp_corrmaps.sh		rest.step4.onesamp_corrmaps.sh
rest.step4.twosamp_corrmaps.sh		rest.step4.twosamp_corrmaps.sh
rest.step5a.overlap.sh		rest.step5a.overlap.sh
rest.step5b.maps_corrs&BA.sh		rest.step5b.maps_corrs&BA.sh
rest.step5c.control_PT_seeds.sh		rest.step5c.control_PT_seeds.sh
rest.step5d.control_PT_prep_randomizer.R		rest.step5d.control_PT_prep_randomizer.R
rest.step5e.control_PT_randomizer.sh		rest.step5e.control_PT_randomizer.sh
rest.step5f.control_PT_randomizer_maps.sh		rest.step5f.control_PT_randomizer_maps.sh
rest.step5g.control_PT_dice.sh		rest.step5g.control_PT_dice.sh
rest.step5i.ROIdice.sh		rest.step5i.ROIdice.sh
rest.step5i.roi_qualitycheck.R		rest.step5i.roi_qualitycheck.R
rest.step6a.maps_corrs&BA.R		rest.step6a.maps_corrs&BA.R
rest.step6b.overlap.R		rest.step6b.overlap.R
rest.step6c.TRexamples.R		rest.step6c.TRexamples.R
rest.step6c.tSNR.R		rest.step6c.tSNR.R
rest.step7a.peaks.sh		rest.step7a.peaks.sh
rest.step7b.peaks.R		rest.step7b.peaks.R

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