Issues

• NewickError: Parentheses do not match. Broken tree structure

  DessimozLab/pyham#34 · Filter by author nromashchenko opened on Sep 24, 2026

• Add functionality to export a HOG as a gene tree in newick format.

  enhancement
  DessimozLab/pyham#28 · Filter by author alpae opened on Oct 10, 2024

• How to draw a singleton？

  DessimozLab/pyham#27 · Filter by author billzhanghantao opened on Mar 26, 2024
  1

• internal node naming bug

  DessimozLab/pyham#26 · Filter by author max-baer opened on Dec 4, 2023
  1

• Can't create pyham.Ham() object

  DessimozLab/pyham#25 · Filter by author max-baer opened on Dec 4, 2023
  1

• ensembl tree

  DessimozLab/pyham#24 · Filter by author rresendepinto opened on Jun 7, 2023
  1

• orthofinder compatibility to pyham

  DessimozLab/pyham#22 · Filter by author eli1199 opened on Aug 3, 2022

• AttributeError: 'NoneType' object has no attribute 'features'

  DessimozLab/pyham#19 · Filter by author gmartinezredondo opened on Dec 6, 2021
  4

• TypeError: expect subclass obj of 'AncestralGenome', got ExtantGenome

  DessimozLab/pyham#7 · Filter by author ethanbass opened on Jun 14, 2020
  3

• Way to filter out minor splicing variants

  DessimozLab/pyham#1 · Filter by author alpae opened on Apr 29, 2019
  1