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k-mer length greater than 31

Status: Open.

#51 In COMBINE-lab/pufferfish;

· zulal-b opened on Jan 28, 2025

CMake scripts fail to detect Arm - cannot build aarch64 out of the box

Status: Open.

#49 In COMBINE-lab/pufferfish;

· dslarm opened on Oct 22, 2024

Fails to compile on IBM Power architecture (ppc64le)

Status: Open.

#47 In COMBINE-lab/pufferfish;

· jblachly opened on Oct 6, 2023

can't install pufferfish

Status: Open.

#46 In COMBINE-lab/pufferfish;

· hungmai1984 opened on Sep 25, 2023

Create and query an index of many human genomes?

Status: Open.

#45 In COMBINE-lab/pufferfish;

· jeremymsimon opened on May 26, 2023

Cedar segfaults with SAM files

Status: Open.

#44 In COMBINE-lab/pufferfish;

· hermidalc opened on Oct 24, 2022

PuffAligner significantly slower at mapping and thread usage is much less than specified when running with --compressedOutput

Status: Open.

#42 In COMBINE-lab/pufferfish;

· hermidalc opened on Oct 24, 2022

Output unmapped reads

Status: Open.

#40 In COMBINE-lab/pufferfish;

· hermidalc opened on Oct 20, 2022

Parallelize fixFasta

Status: Open.

#39 In COMBINE-lab/pufferfish;

· hermidalc opened on Sep 11, 2022

Add description to help that pufferfish index supports gzipped FASTA reference file

Status: Open.

#35 In COMBINE-lab/pufferfish;

· hermidalc opened on Aug 18, 2022

Pufferfish doesn't build within a conda environment (which has all the prerequisites) due to failed build of tslib from SeqLib

Status: Open.

#34 In COMBINE-lab/pufferfish;

· hermidalc opened on Jun 27, 2022

[Compile error] cannot open output file cedar: Is a directory

Status: Open.

#31 In COMBINE-lab/pufferfish;

· enricorox opened on Apr 28, 2022