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AustralianBioCommons / aai-backend Public

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AAI-98 database setup for the user group design#40

Merged

marius-mather merged 72 commits into

mainAustralianBioCommons/aai-backend:mainfrom

biocommons-groupsAustralianBioCommons/aai-backend:biocommons-groupsCopy head branch name to clipboard

Jul 29, 2025

Conversation Commits72 (72)Checks Files changed

Merged

AAI-98 database setup for the user group design#40
marius-mather merged 72 commits into
mainfrom
biocommons-groups

Commits

Commits on Jul 15, 2025

Tests of biocommons utils
marius-mather
committed
Add db and biocommons folders to coverage
marius-mather
committed
Update test DB setup so tests are isolated
marius-mather
committed
Add/update DB models to implement group management
marius-mather
committed
datagen utils for database tests
marius-mather
committed
Tests of group models
marius-mather
committed

Commits on Jul 16, 2025

New base model for our database models: set naming conventions for constraints
marius-mather
committed
Use BaseModel for all existing DB models
marius-mather
committed
Update alembic env file to use the BaseModel
marius-mather
committed
Reset migrations: changed base model for all models
marius-mather
committed
Use BaseModel when setting up test DB
marius-mather
committed

Commits on Jul 17, 2025

BiocommonsGroupCreate model that doesn't require the DB
marius-mather
committed
Auth0Client methods for fetching roles
marius-mather
committed
Save a BiocommonsGroup to the DB
marius-mather
committed
Methods to get_or_create Auth0 roles
marius-mather
committed
Tests for creating group/role objects
marius-mather
committed

Commits on Jul 21, 2025

Datagen functions for biocommons tests
marius-mather
committed
Fixes for saving BiocommonsGroup to DB
marius-mather
committed
Style fix
marius-mather
committed
Initial API endpoints for group management
marius-mather
committed
Add router to main app
marius-mather
committed

Commits on Jul 22, 2025

Make sure we override the DB in testing
marius-mather
committed
Rework testdb so we can use the sme session as the app dependencies
marius-mather
committed
Move BiocommonsGroupResponse to groups module
marius-mather
committed
Tests for group API
marius-mather
committed
Try to rework test setup to prevent unclosed DB
marius-mather
committed
Rename Auth0Role id to just 'id' to match Auth0 data
marius-mather
committed
Reset migrations
marius-mather
committed
create_role() method for Auth0Client
marius-mather
committed
API endpoint to create a role
marius-mather
committed
Test creating role via API
marius-mather
committed
Add config option for sending emails: disabled by default
marius-mather
committed
Only send BPA approval email if send_email config is set
marius-mather
committed
Add functions to get role users - and add UserWithTotals response type
marius-mather
committed
Save group membership along with history entry
marius-mather
committed
Get approval history for a given user
marius-mather
committed
Get all admins for a group from Auth0 API
marius-mather
committed
API endpoint to request group membership
marius-mather
committed
Test request membership API
marius-mather
committed
Allow accessing the admin_user fixture when ID is required
marius-mather
committed
Don't generate None for email in AccessToken factory
marius-mather
committed
Test getting users by roles
marius-mather
committed

Commits on Jul 23, 2025

Disable sending email by default
marius-mather
committed
Allow creating Auth0 roles for groups
marius-mather
committed
Add unique constraints to DB migration - not handled automatically by alembic
marius-mather
committed
Remove outdated TODO
marius-mather
committed
Rename Role -> RoleData for clarity
marius-mather
committed
Update Docker build workflow - set ADMIN_ROLES and SEND_EMAIL variables
marius-mather
committed
Move config to the top level
marius-mather
committed
Make sure galaxy env variables are included in docker env file
marius-mather
committed
Check if a user is an admin for a group
marius-mather
committed
API endpoint to approve group membership
marius-mather
committed
Try to handle factory persistence automatically
marius-mather
committed
Test group approval endpoint
marius-mather
committed
Fix approver address in group approval email
marius-mather
committed
Fix reference to config file
marius-mather
committed
Comment on setting up DB
marius-mather
committed
Dependency to get email service
marius-mather
committed
Get email service from dependency in request_group_membership
marius-mather
committed
Fixtures to mock email service
marius-mather
committed
Fixture for a non-admin user
marius-mather
committed
Test emails are sent to relevant admins when requesting membership
marius-mather
committed
Update dummy domain for Auth0 so no requests actually get sent to auth0.com
marius-mather
committed

Commits on Jul 24, 2025

Methods to add roles to users
marius-mather
committed
Add Auth0 role when approving group membership
marius-mather
committed
Tests for adding roles
marius-mather
committed
Test granting Auth0 role from group membership
marius-mather
committed
Add SEND_EMAIL environment var to example .env file
marius-mather
committed

Commits on Jul 29, 2025

Update auth0/client.py: typo in docstring

marius-mather
and
amandazhuyilan
authored
Include number of duplicate roles when multiple roles are found
marius-mather
committed
Update docstrings for Auth0 responses with totals
marius-mather
committed
Update tests/conftest.py: dummy AWS region in test settings

marius-mather
and
amandazhuyilan
authored

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