add release-please JIRA integration

.github/scripts/tag-jira.py

@@ -0,0 +1,73 @@
+import base64
+import json
+import os
+import re
+import urllib.error
+import urllib.request
+
+base_url = os.environ['JIRA_BASE_URL']
+tag = os.environ['RELEASE_TAG']
+auth = base64.b64encode(
+    f"{os.environ['JIRA_USER_EMAIL']}:{os.environ['JIRA_API_TOKEN']}".encode()
+).decode()
+headers = {
+    'Authorization': f'Basic {auth}',
+    'Content-Type': 'application/json',
+    'Accept': 'application/json',
+}
+
+
+def jira(method, path, body=None):
+    url = f"{base_url}/rest/api/3{path}"
+    data = json.dumps(body).encode() if body else None
+    req = urllib.request.Request(url, data=data, headers=headers, method=method)
+    try:
+        with urllib.request.urlopen(req) as r:
+            text = r.read()
+            return json.loads(text) if text else None
+    except urllib.error.HTTPError as e:
+        print(f"  WARN {e.code} {method} {path}: {e.read().decode()[:200]}")
+        return None
+
+
+tickets = sorted(set(re.findall(r'AAI-\d+', os.environ['RELEASE_BODY'])))
+if not tickets:
+    print("No AAI-* tickets found in release notes — nothing to tag.")
+    raise SystemExit(0)
+print(f"Tickets in {tag}: {', '.join(tickets)}")
+
+project = jira('GET', '/project/AAI')
+if not project:
+    raise SystemExit("ERROR: could not fetch AAI project from JIRA")
+
+versions = jira('GET', '/project/AAI/versions') or []
+existing = next((v for v in versions if v['name'] == tag), None)
+if existing:
+    version_id = existing['id']
+    print(f"Reusing existing JIRA version '{tag}' (id={version_id})")
+else:
+    created = jira('POST', '/version', {
+        'name': tag,
+        'projectId': project['id'],
+        'released': True,
+    })
+    if not created:
+        raise SystemExit("ERROR: could not create JIRA version")
+    version_id = created['id']
+    print(f"Created JIRA version '{tag}' (id={version_id})")
+
+for ticket in tickets:
+    issue = jira('GET', f'/issue/{ticket}?fields=fixVersions,summary')
+    if not issue:
+        print(f"  SKIP {ticket}: issue not found or inaccessible")
+        continue
+    current = issue['fields'].get('fixVersions', [])
+    if any(v['id'] == version_id for v in current):
+        print(f"  SKIP {ticket}: already tagged with {tag}")
+        continue
+    jira('PUT', f'/issue/{ticket}', {
+        'fields': {'fixVersions': current + [{'id': version_id}]}
+    })
+    print(f"  DONE {ticket}: {issue['fields'].get('summary', '')[:60]}")
+
+print(f"\nTagged {len(tickets)} ticket(s) with fix version '{tag}'.")

.github/workflows/release-please.yml

@@ -14,6 +14,7 @@ jobs:
     outputs:
       release_created: ${{ steps.release.outputs.release_created }}
       tag_name: ${{ steps.release.outputs.tag_name }}
+      body: ${{ steps.release.outputs.body }}
     steps:
       - id: release
         uses: googleapis/release-please-action@v4
@@ -89,3 +90,22 @@ jobs:
           sbom: false
           cache-from: type=gha
           cache-to: type=gha,mode=max
+
+  notify-jira:
+    name: Tag JIRA Tickets for Release
+    needs: release
+    if: needs.release.outputs.release_created == 'true'
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Tag JIRA tickets with fix version
+        env:
+          JIRA_BASE_URL: https://biocloud.atlassian.net
+          JIRA_USER_EMAIL: ${{ secrets.JIRA_USER_EMAIL }}
+          JIRA_API_TOKEN: ${{ secrets.JIRA_API_TOKEN }}
+          RELEASE_TAG: ${{ needs.release.outputs.tag_name }}
+          RELEASE_BODY: ${{ needs.release.outputs.body }}
+        run: python3 .github/scripts/tag-jira.py