Issues

• Non-uniform channel densities

  AllenInstitute/sonata#140 · Filter by author bgmeulem opened on Dec 5, 2025
  2

• to_dataframe fails if the number of groups is not == 1

  AllenInstitute/sonata#137 · Filter by author dmastrovito opened on Nov 19, 2025

• Unrecognized model_type single_compartment?

  AllenInstitute/sonata#133 · Filter by author JY-Gao opened on Mar 29, 2023
  1

• Write support for circuit (nodes/edges) files in pySONATA?

  AllenInstitute/sonata#126 · Filter by author chr-pok opened on Nov 27, 2020

• Are node-types CSV files required or optional?

  AllenInstitute/sonata#125 · Filter by author alex4200 opened on Sep 15, 2020

• Announce of the tool to validate SONATA circuits.

  AllenInstitute/sonata#123 · Filter by author asanin-epfl opened on Jul 17, 2020
  5

• How to represent NULL in datasets of SONATA?

  AllenInstitute/sonata#122 · Filter by author asanin-epfl opened on Jul 16, 2020

• 300 cell example in NetPyNE not working

  AllenInstitute/sonata#119 · Filter by author pgleeson opened on Dec 12, 2019
  4

• PRs/issues for stable release with 300 cell examples

  AllenInstitute/sonata#103 · Filter by author pgleeson opened on Apr 29, 2019

• static_synapse -> nest:static_synapse

  AllenInstitute/sonata#102 · Filter by author pgleeson opened on Apr 29, 2019

• BMTK to support recording individual membrane potentials

  AllenInstitute/sonata#99 · Filter by author pgleeson opened on Apr 11, 2019

• NeuroML to support delay in external stimuli

  AllenInstitute/sonata#98 · Filter by author pgleeson opened on Apr 11, 2019

• 300_pointneurons example in NeuroML

  AllenInstitute/sonata#97 · Filter by author pgleeson opened on Mar 27, 2019
  2

• Typo: change instanteneous to instantaneous in examples

  AllenInstitute/sonata#92 · Filter by author pgleeson opened on Feb 13, 2019

• Implement native support for PyNN based cell definitions in SONATA/BMTK

  AllenInstitute/sonata#91 · Filter by author pgleeson opened on Feb 13, 2019
  1

• Plotting synapses on morphology through RTNeuron

  AllenInstitute/sonata#88 · Filter by author anirban6908 opened on Jan 31, 2019
  9

• pysonata - improved documentation

  enhancement
  AllenInstitute/sonata#87 · Filter by author kaeldai opened on Jan 30, 2019
  

• Biochemical reactions with NEURON RxD

  AllenInstitute/sonata#85 · Filter by author SteMasoli opened on Jan 24, 2019

• Support regular expressions in Node sets files

  AllenInstitute/sonata#82 · Filter by author arsenius7 opened on Jan 18, 2019
  7

• Support Python classes as an option to define cell templates

  AllenInstitute/sonata#81 · Filter by author salvadord opened on Jan 17, 2019
  1

• NetPyNE 3D representation of 300 biophys cell network

  AllenInstitute/sonata#78 · Filter by author salvadord opened on Jan 8, 2019
  20

• NetPyNE simulation for one_cell soma_cm2_hh model (sim_tests)

  AllenInstitute/sonata#74 · Filter by author salvadord opened on Dec 11, 2018
  9

• Validator for json files

  enhancementpysonata
  AllenInstitute/sonata#67 · Filter by author kaeldai opened on Nov 28, 2018
  

• Using SI units

  discussion
  AllenInstitute/sonata#66 · Filter by author Hjorthmedh opened on Nov 26, 2018
  2

• NetPyNE simulation results for 9 biophys cell network

  AllenInstitute/sonata#63 · Filter by author salvadord opened on Nov 19, 2018
  23