Hi
Thanks for wallace. It's simply fantastic
I'm finding an error in the Reproduce Component. I cannot get the Session Code or Reference Packages in any file format (Rmd, PDF, HTML, Word). It looks like a "permission denied" error when trying to rename or render Rmd files.
I'm attaching screenshots as I'm not sure how to make a reprex with shiny, but please let me know if you'd prefer other format.
This is my session info:
R version 4.6.0 (2026-04-24)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 24.04.4 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C LC_TIME=es_ES.UTF-8
[4] LC_COLLATE=en_GB.UTF-8 LC_MONETARY=es_ES.UTF-8 LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=es_ES.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=es_ES.UTF-8 LC_IDENTIFICATION=C
time zone: Europe/Madrid
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices datasets utils methods base
other attached packages:
[1] knitr_1.51 glue_1.8.1 wallace_2.2.1 leaflet_2.2.3 shiny_1.13.0
loaded via a namespace (and not attached):
[1] bibtex_0.5.2 RColorBrewer_1.1-3 shape_1.4.6.1 rstudioapi_0.18.0
[5] jsonlite_2.0.0 wk_0.9.5 magrittr_2.0.5 farver_2.1.2
[9] rmarkdown_2.31 ENMeval_2.0.5.2 ragg_1.5.2 fs_2.1.0
[13] fields_17.3 vctrs_0.7.3 RefManageR_1.4.0 memoise_2.0.1
[17] base64enc_0.1-6 terra_1.9-27 htmltools_0.5.9 curl_7.1.0
[21] rangeModelMetadata_0.1.5 raster_3.6-32 s2_1.1.9 sass_0.4.10
[25] KernSmooth_2.23-26 bslib_0.10.0 htmlwidgets_1.6.4 fontawesome_0.5.3
[29] plyr_1.8.9 lubridate_1.9.5 cachem_1.1.0 uuid_1.2-2
[33] commonmark_2.0.0 whisker_0.4.1 mime_0.13 lifecycle_1.0.5
[37] iterators_1.0.14 pkgconfig_2.0.3 Matrix_1.7-5 rebird_1.3.0
[41] R6_2.6.1 fastmap_1.2.0 digest_0.6.39 leafem_0.2.5
[45] textshaping_1.0.5 crosstalk_1.2.2 leaflet.extras_2.0.2 labeling_0.4.3
[49] urltools_1.7.3.1 timechange_0.4.0 httr_1.4.8 adehabitatHR_0.4.22
[53] RPostgreSQL_0.7-8 compiler_4.6.0 proxy_0.4-29 withr_3.0.2
[57] doParallel_1.0.17 S7_0.2.2 backports_1.5.1 knitcitations_1.0.12
[61] DBI_1.3.0 spThin_0.2.0 maps_3.4.3 ecospat_4.1.3
[65] MASS_7.3-65 rappdirs_0.3.4 classInt_0.4-11 oai_0.4.0
[69] tools_4.6.0 units_1.0-1 otel_0.2.0 ape_5.8-1
[73] zip_2.3.3 httpuv_1.6.17 rgbif_3.8.5 geodata_0.6-9
[77] bspm_0.5.7 nlme_3.1-168 promises_1.5.0 grid_4.6.0
[81] rsconnect_1.8.0 sf_1.1-1 ade4_1.7-24 generics_0.1.4
[85] predicts_0.2-2 maxnet_0.1.4 leaflet.providers_3.0.0 gtable_0.3.6
[89] class_7.3-23 tidyr_1.3.2 dismo_1.3-16 data.table_1.18.4
[93] sp_2.2-1 xml2_1.5.2 shinyalert_3.1.0 foreach_1.5.2
[97] pillar_1.11.1 markdown_2.0 stringr_1.6.0 spam_2.11-3
[101] later_1.4.8 splines_4.6.0 ridigbio_0.4.1 dplyr_1.2.1
[105] lattice_0.22-9 survival_3.8-6 tidyselect_1.2.1 litedown_0.9
[109] crul_1.6.0 BIEN_1.2.8 xfun_0.57 spocc_1.2.4
[113] adehabitatMA_0.3.17 DT_0.34.0 adehabitatLT_0.3.29 stringi_1.8.7
[117] lazyeval_0.2.3 yaml_2.3.12 httpcode_0.3.0 shinyWidgets_0.9.1
[121] evaluate_1.0.5 codetools_0.2-20 tibble_3.3.1 cli_3.6.6
[125] systemfonts_1.3.2 xtable_1.8-4 jquerylib_0.1.4 rvertnet_0.8.4
[129] Rcpp_1.1.1-1.1 triebeard_0.4.1 png_0.1-9 parallel_4.6.0
[133] ggplot2_4.0.3 assertthat_0.2.1 dotCall64_1.2 glmnet_5.0
[137] viridisLite_0.4.3 scales_1.4.0 e1071_1.7-17 purrr_1.2.2
[141] rlang_1.2.0 shinyjs_2.1.1
Any advice on how to overcome this problem?
Thank you very much in advance
Hi
Thanks for wallace. It's simply fantastic
I'm finding an error in the Reproduce Component. I cannot get the Session Code or Reference Packages in any file format (Rmd, PDF, HTML, Word). It looks like a "permission denied" error when trying to rename or render Rmd files.
I'm attaching screenshots as I'm not sure how to make a reprex with shiny, but please let me know if you'd prefer other format.
This is my session info:
Any advice on how to overcome this problem?
Thank you very much in advance