Development docker (or other environment) for all of us to play with the code in petsc4py

[julesghub]

[julesghub]

https://denibertovic.com/posts/handling-permissions-with-docker-volumes/

[rbeucher]

I have just tried the image @brmather pushed to docker-hub. Jupyterhub returns an error...

[lmoresi]

Does the singleuser docker image launch ok in your setup ? Prof Louis Moresi louis.moresi@unimelb.edu.au<mailto:louis.moresi@unimelb.edu.au> (w) +61 3 8344 1217 (m) +61 4 0333 1413 (us) +1 505 349 4425 www.moresi.info<http://www.moresi.info/> www.facebook.com/underworldcode<http://www.facebook.com/underworldcode> @LouisMoresi<https://twitter.com/LouisMoresi> On 25 May 2019, 17:44 +1000, Romain Beucher <notifications@github.com>, wrote: I have just tried the image @brmather<https://github.com/brmather> pushed to docker-hub. Jupyterhub returns an error... — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub<#4?email_source=notifications&email_token=ADABPIZP6BS2IQLY22QAGBDPXDU3PA5CNFSM4HPLVLI2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODWHIIDA#issuecomment-495879180>, or mute the thread<https://github.com/notifications/unsubscribe-auth/ADABPI7ADS6I2YANT65NVYDPXDU3PANCNFSM4HPLVLIQ>.

[brmather]

The image I pushed doesn't contain the jupyter hub stuff - can we first confirm if UW3 dev stuff works on that base? I haven't got Quagmire working on it yet, but that's because some of the petsc4py API have been depreciated. Going to look at this later today...

…

On Sat., 25 May 2019, 17:52 Louis Moresi, ***@***.***> wrote: Does the singleuser docker image launch ok in your setup ? Prof Louis Moresi ***@***.******@***.***> (w) +61 3 8344 1217 (m) +61 4 0333 1413 (us) +1 505 349 4425 www.moresi.info<http://www.moresi.info/> www.facebook.com/underworldcode<http://www.facebook.com/underworldcode> @LouisMoresi<https://twitter.com/LouisMoresi> On 25 May 2019, 17:44 +1000, Romain Beucher ***@***.***>, wrote: I have just tried the image @brmather<https://github.com/brmather> pushed to docker-hub. Jupyterhub returns an error... — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub< #4?email_source=notifications&email_token=ADABPIZP6BS2IQLY22QAGBDPXDU3PA5CNFSM4HPLVLI2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODWHIIDA#issuecomment-495879180>, or mute the thread< https://github.com/notifications/unsubscribe-auth/ADABPI7ADS6I2YANT65NVYDPXDU3PANCNFSM4HPLVLIQ>. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#4?email_source=notifications&email_token=ADZNW2I6AEIOKFKE5WVUGD3PXDV4BA5CNFSM4HPLVLI2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODWHITSA#issuecomment-495880648>, or mute the thread <https://github.com/notifications/unsubscribe-auth/ADZNW2IULGLKEFE3GMCCXFLPXDV4BANCNFSM4HPLVLIQ> .

[rbeucher]

I tried the base image:

docker run underworldcode/base:petsc4py-3.11.2
tini returns an error.

[FATAL tini (6)] exec jupyterhub failed: No such file or directory

Are you sure you've pushed the correct image @brmather ?

[brmather]

Hi @rbeucher - there's no jupyterhub installed in the image. But hold tight! I'm compiling one that does. In the meantime, you can log into the container on the command line to test your any scripts you have.

[julesghub]

This is the cmd line I have been using to test the image
docker run --rm -it \ -e COLUMNS=$COLUMNS -e LINES=$LINES \ -v $HOME:/workspace \ -p 8891:8888 \ --privileged \ underworldcode/base:petsc4py-3.11.2 bash

[brmather]

We have new Docker images!

All of these have petsc4py build on petsc version 3.11.2 with the usual suspects (jupyter notebook, lavavu, matplotlib, etc.)

• underworldcode/petsc4py:3.11.2-slim 1.4GB - smallest image I could manage
• underworldcode/petsc4py:3.11.2-jupyterhub 1.6GB - 3.11.2-slim base with jupyterhub (note: there is no configuration file for jupyterhub)
• underworldcode/petsc4py:3.11.2-debug 1.8GB - debugging version of petsc with valgrind, sphinx, and plotly

The Dockerfiles can be found in the underworld2 development branch. Right now the default user is jovyan - next up is to implement the fancy volume mount that @julesghub showed.