e-utilities

Here are 2 public repositories matching this topic...

cyanheads / pubmed-mcp-server

Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP.

bioinformatics typescript mcp pubmed citations open-access mesh full-text ncbi biomedical ai-agents europe-pmc unpaywall ai-tools pubmed-api model-context-protocol mcp-server e-utilities cyanheads

Updated Jun 9, 2026
TypeScript

SidSin0809 / phyloseq-taxid-resolver

Star

Batch-resolve NCBI Taxonomy IDs (TaxIDs) from a phyloseq-style taxonomy CSV using Biopython Entrez, with a live tqdm progress bar, caching, resume, safe partial writes, and optional species-rank verification.

python bioinformatics metagenomics biopython entrez ncbi-taxonomy command-line-tool taxid microbiome ncbi tqdm phyloseq refseq e-utilities

Updated Sep 18, 2025
Python

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