Merge branch 'main' into jfm-paper

Author: rebeccamccabe

.gitmodules

@@ -1,6 +1,6 @@
 [submodule "src/sea-lab-utils"]
 	path = src/sea-lab-utils
-	url = https://github.com/symbiotic-engineering/sea-lab-utils
+	url = https://github.com/symbiotic-engineering/sea-lab-utils.git
 [submodule "sea-lab-utils"]
 	path = sea-lab-utils
 	url = https://github.com/symbiotic-engineering/sea-lab-utils.git

pubs/figs/streamlit1.png

@@ -1,101 +1,198 @@
+@article{Ancellin2019,
+  doi = {10.21105/joss.01341},
+  url = {https://doi.org/10.21105/joss.01341},
+  year = {2019},
+  publisher = {The Open Journal},
+  volume = {4},
+  number = {36},
+  pages = {1341},
+  author = {Ancellin, Matthieu and Dias, Frédéric},
+  title = {Capytaine: a Python-based linear potential flow solver},
+  journal = {Journal of Open Source Software}
+}
+
+@misc{azad2023,
+  title = {Concurrent Probabilistic Control Co-Design and Layout Optimization of Wave Energy Converter Farms using Surrogate Modeling},
+  author = {Saeed Azad and Daniel R. Herber},
+  year = {2023},
+  eprint = {2308.06418},
+  archivePrefix = {arXiv},
+  primaryClass = {eess.SY},
+  url = {https://arxiv.org/abs/2308.06418}
+}
+
 @article{bhattacharya2021timing,
-  author    = {Bhattacharya, S. and Pennock, S. and Robertson, B. and Hanif, S. and Alam, M. J. E. and Bhatnagar, D. and Preziuso, D. and O’Neil, R.},
-  title     = {Timing Value of Marine Renewable Energy Resources for Potential Grid Applications},
-  journal   = {Applied Energy},
-  volume    = {299},
-  pages     = {117281},
-  year      = {2021},
-  doi       = {10.1016/j.apenergy.2021.117281}
+  author = {Bhattacharya, S. and Pennock, S. and Robertson, B. and Hanif, S. and Alam, M. J. E. and Bhatnagar, D. and Preziuso, D. and O'Neil, R.},
+  title = {Timing Value of Marine Renewable Energy Resources for Potential Grid Applications},
+  journal = {Applied Energy},
+  volume = {299},
+  pages = {117281},
+  year = {2021},
+  doi = {10.1016/j.apenergy.2021.117281}
 }
 
 @book{chatjigeorgiou2018analytical,
-  author    = {Chatjigeorgiou, I. K.},
-  title     = {Analytical Methods in Marine Hydrodynamics},
-  year      = {2018},
+  author = {Chatjigeorgiou, I. K.},
+  title = {Analytical Methods in Marine Hydrodynamics},
+  year = {2018},
   publisher = {Cambridge University Press},
-  doi       = {10.1017/9781316838983},
-  url       = {https://doi.org/10.1017/9781316838983}
+  doi = {10.1017/9781316838983},
+  url = {https://doi.org/10.1017/9781316838983}
 }
 
 @inproceedings{chau2010inertia,
-  author    = {Chau, F. P. and Yeung, R. W.},
-  title     = {Inertia and Damping of Heaving Compound Cylinders},
+  author = {Chau, F. P. and Yeung, R. W.},
+  title = {Inertia and Damping of Heaving Compound Cylinders},
   booktitle = {Proceedings of the 25th International Workshop on Water Waves and Floating Bodies},
-  address   = {Harbin, China},
-  year      = {2010},
-  url       = {https://www.academia.edu/73219479/Inertia_and_Damping_of_Heaving_Compound_Cylinders_Fun}
+  address = {Harbin, China},
+  year = {2010},
+  url = {https://www.academia.edu/73219479/Inertia_and_Damping_of_Heaving_Compound_Cylinders_Fun}
 }
 
 @inproceedings{chau2012inertia,
-  author    = {Chau, F. P. and Yeung, R. W.},
-  title     = {Inertia, Damping, and Wave Excitation of Heaving Coaxial Cylinders},
+  author = {Chau, F. P. and Yeung, R. W.},
+  title = {Inertia, Damping, and Wave Excitation of Heaving Coaxial Cylinders},
   booktitle = {ASME 2012 31st International Conference on Ocean, Offshore and Arctic Engineering},
-  pages     = {803--813},
+  pages = {803-813},
   publisher = {American Society of Mechanical Engineers},
-  year      = {2012},
-  doi       = {10.1115/OMAE2012-83987},
-  url       = {https://doi.org/10.1115/OMAE2012-83987}
+  year = {2012},
+  doi = {10.1115/OMAE2012-83987},
+  url = {https://doi.org/10.1115/OMAE2012-83987}
+}
+
+@phdthesis{choi:tel-02493305,
+  title = {{Two-way coupling between potential and viscous flows for a marine application}},
+  author = {Choi, Young-Myung},
+  url = {https://theses.hal.science/tel-02493305},
+  number = {2019ECDN0046},
+  school = {{{\'E}cole centrale de Nantes}},
+  year = {2019},
+  month = nov,
+  type = {Theses}
 }
 
 @article{fusco2010variability,
-  author    = {Fusco, F. and Nolan, G. and Ringwood, J.},
-  title     = {Variability Reduction through Optimal Combination of Wind/Wave Resources – An Irish Case Study},
-  journal   = {Energy},
-  volume    = {35},
-  number    = {1},
-  pages     = {314--325},
-  year      = {2010},
-  doi       = {10.1016/j.energy.2009.10.018}
+  author = {Fusco, F. and Nolan, G. and Ringwood, J.},
+  title = {Variability Reduction through Optimal Combination of Wind/Wave Resources – An Irish Case Study},
+  journal = {Energy},
+  volume = {35},
+  number = {1},
+  pages = {314-325},
+  year = {2010},
+  doi = {10.1016/j.energy.2009.10.018}
+}
+
+@misc{gambarini2024,
+  title = {A gradient flow approach for combined layout-control design of wave energy parks},
+  author = {Marco Gambarini and Gabriele Ciaramella and Edie Miglio},
+  year = {2024},
+  eprint = {2409.10200},
+  archivePrefix = {arXiv},
+  primaryClass = {math.OC},
+  url = {https://arxiv.org/abs/2409.10200}
+}
+
+@software{gower2025multiplescattering,
+  title = {MultipleScattering.jl},
+  author = {Gower, Artur L and Deakin, J},
+  version = {v0.21.1},
+  doi = {10.5281/zenodo.1213225},
+  url = {github.com/JuliaWaveScattering/MultipleScattering.jl},
+  year = {2025}
 }
 
 @article{kokkinowrachos1986behaviour,
-  author    = {Kokkinowrachos, K. and Mavrakos, S. and Asorakos, S.},
-  title     = {Behaviour of Vertical Bodies of Revolution in Waves},
-  journal   = {Ocean Engineering},
-  volume    = {13},
-  number    = {6},
-  pages     = {505--538},
-  year      = {1986},
-  doi       = {10.1016/0029-8018(86)90037-5},
-  url       = {https://doi.org/10.1016/0029-8018(86)90037-5}
+  author = {Kokkinowrachos, K. and Mavrakos, S. and Asorakos, S.},
+  title = {Behaviour of Vertical Bodies of Revolution in Waves},
+  journal = {Ocean Engineering},
+  volume = {13},
+  number = {6},
+  pages = {505-538},
+  year = {1986},
+  doi = {10.1016/0029-8018(86)90037-5},
+  url = {https://doi.org/10.1016/0029-8018(86)90037-5}
+}
+
+@article{MCNATT2015173,
+  title = {A novel method for deriving the diffraction transfer matrix and its application to multi-body interactions in water waves},
+  journal = {Ocean Engineering},
+  volume = {94},
+  pages = {173-185},
+  year = {2015},
+  issn = {0029-8018},
+  doi = {10.1016/j.oceaneng.2014.11.029},
+  url = {https://www.sciencedirect.com/science/article/pii/S0029801814004417},
+  author = {J. Cameron McNatt and Vengatesan Venugopal and David Forehand}
 }
 
 @inproceedings{mccabe2024open,
-  author    = {McCabe, R. and Khanal, K. and Haji, M.},
-  title     = {Open-source Toolbox for Semi-analytical Hydrodynamic Coefficients via the Matched Eigenfunction Expansion Method},
+  author = {McCabe, R. and Khanal, K. and Haji, M.},
+  title = {Open-source Toolbox for Semi-analytical Hydrodynamic Coefficients via the Matched Eigenfunction Expansion Method},
   booktitle = {UMERC+METS 2024 Conference},
-  address   = {Duluth, MN, USA},
-  year      = {2024},
-  doi       = {10.5281/zenodo.14504016},
-  url       = {https://doi.org/10.5281/zenodo.14504016}
+  address = {Duluth, MN, USA},
+  year = {2024},
+  doi = {10.5281/zenodo.14504016},
+  url = {https://doi.org/10.5281/zenodo.14504016}
 }
 
 @unpublished{mccabe2024numerics,
-  author    = {McCabe, R. and Khanal, K. and Bimali, Y. and Lo, E. and Treacy, C. and Haji, M.},
-  title     = {Numerics of the Matched Eigenfunction Method for Computing Wave Forces on Concentric Bodies},
-  note      = {In preparation},
-  year      = {2024}
+  author = {McCabe, R. and Khanal, K. and Bimali, Y. and Lo, E. and Treacy, C. and Haji, M.},
+  title = {Numerics of the Matched Eigenfunction Method for Computing Wave Forces on Concentric Bodies},
+  note = {In preparation},
+  year = {2024}
+}
+
+@unpublished{MDOcean2026,
+  author = {McCabe, R. and Dietrich, M. and Haji, M.},
+  title = {Leveraging Multidisciplinary Design Optimization to Advance Wave Energy Converter Viability},
+  note = {In preparation},
+  journal = {Renewable Energy},
+  year = {2026}
+}
+
+@article{Nguyen-2024-22485,
+  author = {Nguyen, N and Davis, J and Tom, N and Thiagarajan, K},
+  title = {Theoretical modeling of a bottom-raised oscillating surge wave energy converter structural loadings and power performances},
+  journal = {Applied Ocean Research},
+  year = {2024},
+  month = aug,
+  publisher = {Elsevier},
+  volume = {149},
+  pages = {104031},
+  doi = {10.1016/j.apor.2024.104031},
+  url = {https://www.sciencedirect.com/science/article/pii/S0141118724001536}
+}
+
+@article{SAHydro2015,
+  author = {Olaya, Sébastien and Bourgeot, Jean-Matthieu and Benbouzid, Mohamed El Hachemi},
+  journal = {IEEE Journal of Oceanic Engineering},
+  title = {Hydrodynamic Coefficient Computation for a Partially Submerged Wave Energy Converter},
+  year = {2015},
+  volume = {40},
+  number = {3},
+  pages = {522-535},
+  doi = {10.1109/JOE.2014.2344951}
 }
 
 @article{son2016performance,
-  author    = {Son, D. and Belissen, V. and Yeung, R. W.},
-  title     = {Performance Validation and Optimization of a Dual Coaxial-cylinder Ocean-wave Energy Extractor},
-  journal   = {Renewable Energy},
-  volume    = {92},
-  pages     = {192--201},
-  year      = {2016},
-  doi       = {10.1016/j.renene.2016.01.032},
-  url       = {https://doi.org/10.1016/j.renene.2016.01.032}
+  author = {Son, D. and Belissen, V. and Yeung, R. W.},
+  title = {Performance Validation and Optimization of a Dual Coaxial-cylinder Ocean-wave Energy Extractor},
+  journal = {Renewable Energy},
+  volume = {92},
+  pages = {192-201},
+  year = {2016},
+  doi = {10.1016/j.renene.2016.01.032},
+  url = {https://doi.org/10.1016/j.renene.2016.01.032}
 }
 
 @article{yeung1981added,
-  author    = {Yeung, R. W.},
-  title     = {Added Mass and Damping of a Vertical Cylinder in Finite-depth Waters},
-  journal   = {Applied Ocean Research},
-  volume    = {3},
-  number    = {3},
-  pages     = {119--133},
-  year      = {1981},
-  doi       = {10.1016/0141-1187(81)90101-2},
-  url       = {https://doi.org/10.1016/0141-1187(81)90101-2}
-}
+  author = {Yeung, R. W.},
+  title = {Added Mass and Damping of a Vertical Cylinder in Finite-depth Waters},
+  journal = {Applied Ocean Research},
+  volume = {3},
+  number = {3},
+  pages = {119-133},
+  year = {1981},
+  doi = {10.1016/0141-1187(81)90101-2},
+  url = {https://doi.org/10.1016/0141-1187(81)90101-2}
+}