From dfb4b1a258bede304adb7e0c79664ce96533b914 Mon Sep 17 00:00:00 2001
From: Becca <32020426+rebeccamccabe@users.noreply.github.com>
Date: Sat, 20 Sep 2025 15:35:41 -0400
Subject: [PATCH 1/2] Add Jupyter and remove latex pull from devcontainer

To match dc9f1b2c957c7bafb8b92c9e370dc03389f470b2 at calkit/example-basic
---
 .devcontainer/calkit/devcontainer.json | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.devcontainer/calkit/devcontainer.json b/.devcontainer/calkit/devcontainer.json
index 0fe4c0ec..58d419e3 100644
--- a/.devcontainer/calkit/devcontainer.json
+++ b/.devcontainer/calkit/devcontainer.json
@@ -15,7 +15,8 @@
         "streetsidesoftware.code-spell-checker",
         "redhat.vscode-yaml",
         "akamud.vscode-theme-onedark",
-        "mechatroner.rainbow-csv"
+        "mechatroner.rainbow-csv",
+        "ms-toolsai.jupyter"
       ],
       "settings": {
         "latex-workshop.latex.external.build.command": "calkit",
@@ -40,6 +41,5 @@
   "mounts": [
     "source=${localEnv:HOME}/.calkit,target=/home/vscode/.calkit,type=bind,consistency=cached"
   ],
-  "postCreateCommand": "conda init bash",
-  "postStartCommand": "docker pull texlive/texlive:latest-full"
+  "postCreateCommand": "conda init bash"
 }

From e00f10497c29b85030da5254b4a4bb17bec02036 Mon Sep 17 00:00:00 2001
From: "github-actions[bot]"
 <41898282+github-actions[bot]@users.noreply.github.com>
Date: Sat, 20 Sep 2025 19:38:32 +0000
Subject: [PATCH 2/2] Run pipeline

---
 .calkit/env-locks/tex.json | 20 ++++++++++----------
 dvc.lock                   | 10 +++++-----
 2 files changed, 15 insertions(+), 15 deletions(-)

diff --git a/.calkit/env-locks/tex.json b/.calkit/env-locks/tex.json
index 09a36ad8..ca9f142b 100644
--- a/.calkit/env-locks/tex.json
+++ b/.calkit/env-locks/tex.json
@@ -3,23 +3,23 @@
         "texlive/texlive:latest-full"
     ],
     "RepoDigests": [
-        "texlive/texlive@sha256:bb01a2449cff26abafb4788a5ea01d37ce1d3329af87a0344433c9610eda44b4"
+        "texlive/texlive@sha256:a95956d683071411d628044dafa2c2824501316474453a989150d4986c073046"
     ],
     "Architecture": "amd64",
     "Os": "linux",
-    "Size": 5220539927,
+    "Size": 5209111249,
     "RootFS": {
         "Type": "layers",
         "Layers": [
-            "sha256:612c2b206201f241fa381be8ec4426c972d1f1f87aa0a03c6069e3208234cdd8",
-            "sha256:8196c9c43ec0aa8e017a38c796801359c227a833cecfeb59181808168c3549a5",
-            "sha256:9c8da95dfba8fa8369ba70af7e5daf0825c4c088c2cd0a599a070f1827b08fbe",
+            "sha256:41faf5229ff80efa7318ee6b9a00a43c616064081953c40d4e41288064791852",
+            "sha256:112fae3f00e21a4a090f36bfbc7ae6d7af58f69a8250623b1bd24fdd86bc560f",
+            "sha256:c3f91a6a0c97ccb6926209e4583276accdf257c93c863e9150c8621f55d8a7d8",
             "sha256:5f70bf18a086007016e948b04aed3b82103a36bea41755b6cddfaf10ace3c6ef",
-            "sha256:ba0ec8659b8a3e411d5193481fb91650949247ea08f4f6d42928a180b547e2e5",
-            "sha256:1138a185b15c3035c617401f890836e98e8a519932ab2b3d0f33bb671af7ea89",
-            "sha256:7393394489e8a82dc917a09a0c0f4762ae7f86c5cd968e02167a9178ab2a76a6",
-            "sha256:20f0406ff70025c0e3597ee23bb00d42e4a8167698f7d67697c3a363cef2507d",
-            "sha256:a19b338cd13ebcfe9f39ef0247090af3d294b4349359ec52842e18b22bd87603"
+            "sha256:aa6729c1801b6eaa558d6c821d67fa8bfef183bdc8d4e4ff6eae54480891d5f9",
+            "sha256:4ffb92883a6c8b5068696efcae8b291dc449e97f05979f0957a1c9c2dffa7a9b",
+            "sha256:177290ae94ec9db5d37d7029619ebe50acdfe19f0acc88ac27e2f78d8d22712f",
+            "sha256:4d6437dcd2e02dd0390611b8ea3d4201da5ee251f878381f4e51119271fa0bfa",
+            "sha256:1bc0a4145d6dd5bdc3518f964be146ebf9dabe80b6b279aadc156b0d9ce52fd3"
         ]
     },
     "DockerfileMD5": null,
diff --git a/dvc.lock b/dvc.lock
index 5b4eb912..3143baab 100644
--- a/dvc.lock
+++ b/dvc.lock
@@ -53,7 +53,7 @@ stages:
     outs:
     - path: .calkit/env-locks/tex.json
       hash: md5
-      md5: 06c54a2e51a071a92c34d67ca4c72e01
+      md5: cb8452ceb0b6f62d4a20a62d13da7b58
       size: 1171
   build-RE-paper:
     cmd: calkit xenv -n tex --no-check -- latexmk -cd -interaction=nonstopmode 
@@ -61,7 +61,7 @@ stages:
     deps:
     - path: .calkit/env-locks/tex.json
       hash: md5
-      md5: 06c54a2e51a071a92c34d67ca4c72e01
+      md5: cb8452ceb0b6f62d4a20a62d13da7b58
       size: 1171
     - path: pubs/elsarticle-num-names.bst
       hash: md5
@@ -97,7 +97,7 @@ stages:
     outs:
     - path: pubs/renewable-energy-mdo/mdocean.pdf
       hash: md5
-      md5: 72be0e153c77b871ab126efbc6d53bd2
+      md5: 11b71b2f40f26377f34e59ce9aa15199
       size: 2797327
   build-AOR-paper:
     cmd: calkit xenv -n tex --no-check -- latexmk -cd -interaction=nonstopmode 
@@ -105,7 +105,7 @@ stages:
     deps:
     - path: .calkit/env-locks/tex.json
       hash: md5
-      md5: 06c54a2e51a071a92c34d67ca4c72e01
+      md5: cb8452ceb0b6f62d4a20a62d13da7b58
       size: 1171
     - path: mdocean/simulation/modules/OpenFLASH/pubs/src/meem-appendix.tex
       hash: md5
@@ -135,5 +135,5 @@ stages:
     outs:
     - path: pubs/applied-ocean-research-model/main.pdf
       hash: md5
-      md5: f7214fa064f90779e0d266ed29da999b
+      md5: 2dbaf0b1ca8e524ebda5c74f33bef7ef
       size: 3603527