Skip to content

get_sequence_type -s "Pseudomonas aeruginosa" *.fna Can't locate Bio/Perl.pm in @INC (you may need to install the Bio::Perl module) #94

Description

@neelam19051

Hi, i am trying to run mlst_check and i am getting this error . could you please help me out?

*get_sequence_type -s "Pseudomonas aeruginosa" .fna
Can't locate Bio/Perl.pm in @inc (you may need to install the Bio::Perl module) (@inc contains: /software/pathogen/internal/prod/lib ./lib ../lib /home/bvs/perl5/lib/perl5/x86_64-linux-thread-multi /home/bvs/perl5/lib/perl5 /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/x86_64-linux-thread-multi /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2 /home/bvs/anaconda3/envs/myenv/lib/5.26.2/x86_64-linux-thread-multi /home/bvs/anaconda3/envs/myenv/lib/5.26.2 .) at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/CompareAlleles.pm line 9.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/CompareAlleles.pm line 9.
Compilation failed in require at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/ProcessFasta.pm line 8.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/ProcessFasta.pm line 8.
Compilation failed in require at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/Check.pm line 7.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/Check.pm line 7.
Compilation failed in require at /home/bvs/anaconda3/envs/myenv/bin/get_sequence_type line 14.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/bin/get_sequence_type line 14.

Thank you

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type
    No fields configured for issues without a type.

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions