Is your feature request related to a problem? Please describe.
After segmenting and predicting cell types (with HistoPLUS, for instance), I see the results in slide['cell_types'] but it only has 3 columns: prob, class, geometry
Describe the solution you'd like
It would be great to add tile_id or tile_id, tissue_id to the cell_types table automatically during inference
Describe alternatives you've considered
Of course, I can compute the overlap with tile coordinates and find where each cell belongs
Submit a pull request
Is your feature request related to a problem? Please describe.
After segmenting and predicting cell types (with HistoPLUS, for instance), I see the results in
slide['cell_types']but it only has 3 columns:prob, class, geometryDescribe the solution you'd like
It would be great to add
tile_idortile_id, tissue_idto thecell_typestable automatically during inferenceDescribe alternatives you've considered
Of course, I can compute the overlap with tile coordinates and find where each cell belongs
Submit a pull request