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<!DOCTYPE html>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>Installation — PyHRF</title>
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<li><a class="reference internal" href="#">Installation</a><ul>
<li><a class="reference internal" href="#requirements-dependencies">Requirements / Dependencies</a></li>
<li><a class="reference internal" href="#linux-installation">Linux Installation</a></li>
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<li><a class="reference internal" href="#">Installation</a><ul>
<li><a class="reference internal" href="#requirements-dependencies">Requirements / Dependencies</a></li>
<li><a class="reference internal" href="#linux-installation">Linux Installation</a></li>
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<div class="section" id="installation">
<span id="id1"></span><h1>Installation<a class="headerlink" href="#installation" title="Permalink to this headline">¶</a></h1>
<p>Instructions are given for <strong>Linux</strong> and <strong>Python 2.7</strong>. The package is
mainly developed and tested under Ubuntu 14.04, we then recommend this
distribution. We officially support Ubuntu 12.04, Ubuntu 14.04,
Debian stable (jessie), Fedora 21 and 22, and Arch Linux. See below for
instructions for each distribution.</p>
<p>For <strong>windows users</strong>, a linux distribution can be installed easily inside a
virtual machine such as Virtual Box. This wiki page explains
<a class="reference external" href="http://www.wikihow.com/Install-Ubuntu-on-VirtualBox">how to install ubuntu from scratch in Virtual Box</a>
or you can get some <a class="reference external" href="http://virtualboxes.org/images/ubuntu/">free VirtualBox images</a>.</p>
<div class="section" id="requirements-dependencies">
<h2>Requirements / Dependencies<a class="headerlink" href="#requirements-dependencies" title="Permalink to this headline">¶</a></h2>
<p>Dependencies are:</p>
<ul class="simple">
<li><a class="reference external" href="http://www.python.org">python</a> 2.7 <strong>with development headers</strong></li>
<li><a class="reference external" href="http://docs.scipy.org/doc/numpy/user/install.html">numpy</a> >= 1.0</li>
<li><a class="reference external" href="http://www.scipy.org/install.html">scipy</a> >= 0.7</li>
<li><a class="reference external" href="http://matplotlib.org/users/installing.html">matplotlib</a></li>
<li><a class="reference external" href="http://nipy.sourceforge.net/nibabel/">nibabel</a></li>
<li><a class="reference external" href="http://sympy.sourceforge.net">sympy</a> (required by nipy)</li>
<li><a class="reference external" href="http://nipy.sourceforge.net/nipy/stable/users/installation.html">nipy</a></li>
<li>a C compiler</li>
</ul>
<p>Optional dependencies:</p>
<ul class="simple">
<li><a class="reference external" href="https://www.riverbankcomputing.com/software/pyqt/download">PyQt4</a> (viewer and XML editor)</li>
<li><a class="reference external" href="https://pythonhosted.org/joblib">joblib</a> (local distributed computing)</li>
<li><a class="reference external" href="http://www.paramiko.org">paramiko</a> (local network distributed computing)</li>
<li><a class="reference external" href="https://github.com/neurospin/soma-workflow">soma-workflow</a> (remote distributed computing)</li>
<li><a class="reference external" href="http://scikit-learn.org/">scikit-learn</a> (clustering)</li>
<li><a class="reference external" href="http://www.sphinx-doc.org">sphinx</a> (to generate documentation)</li>
<li><a class="reference external" href="https://pygraphviz.github.io">pygraphviz</a> (for optimized graph operations and outputs)</li>
<li><a class="reference external" href="http://software.clapper.org/munkres">munkres</a> (parcellation operation)</li>
</ul>
</div>
<div class="section" id="linux-installation">
<h2>Linux Installation<a class="headerlink" href="#linux-installation" title="Permalink to this headline">¶</a></h2>
<p>Please refer to the page corresponding to your distribution.</p>
<div class="toctree-wrapper compound">
<ul>
<li class="toctree-l1"><a class="reference internal" href="installation/ubuntu_12_04.html">Installation for Ubuntu 12.04</a></li>
<li class="toctree-l1"><a class="reference internal" href="installation/ubuntu_14_04.html">Installation for Ubuntu 14.04</a></li>
<li class="toctree-l1"><a class="reference internal" href="installation/ubuntu_16_04.html">Installation for Ubuntu 16.04</a></li>
<li class="toctree-l1"><a class="reference internal" href="installation/debian_stable.html">Installation for Debian stable (jessie)</a></li>
<li class="toctree-l1"><a class="reference internal" href="installation/fedora_21.html">Installation for Fedora 21</a></li>
<li class="toctree-l1"><a class="reference internal" href="installation/fedora_22.html">Installation for Fedora 22</a></li>
</ul>
</div>
<p>If you have another distribution or you are an advanced user, consider
<a class="reference internal" href="installation/venv.html"><span class="doc">installing pyhrf in a virtual environment</span></a>.</p>
</div>
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