Issues

• integrate structural variants

  enhancement
  Feature

  oncodash/oncodashkb#68 · Filter by author jdreo opened on Jul 7, 2026 · OncodashKB 0.5 - publication
  

• During fusion, use the score of biomarker edge in the serialization, to avoid merging edges with different scores

  enhancement
  Feature

  oncodash/oncodashkb#67 · Filter by author jdreo opened on Jul 7, 2026 · OncodashKB 0.5 - publication
  

• pb with "ambiguous" for gene statuses

  oncodash/oncodashkb#64 · Filter by author njmmatthieu opened on May 28, 2026
  

• gene status with hugo symbols or ensembl ids ?

  oncodash/oncodashkb#62 · Filter by author njmmatthieu opened on May 28, 2026
  

• Different levels of confidence between an alteration and a drug.

  oncodash/oncodashkb#61 · Filter by author njmmatthieu opened on May 27, 2026
  

• Upgrade OT adapters to new version of OT (26.03)

  oncodash/oncodashkb#59 · Filter by author njmmatthieu opened on May 26, 2026

• TODO for the graphical abstract of the pre-inquiry submission:

  oncodash/oncodashkb#57 · Filter by author njmmatthieu opened on May 6, 2026
  1

  

• Manage keys with dot (.) in format_map for column names using translate transformers.

  Bug

  oncodash/oncodashkb#49 · Filter by author njmmatthieu opened on Mar 18, 2026 · OncodashKB 0.5 - publication
  

• Fusion HUGO Symbol to Emsembl id

  enhancement
  Feature

  oncodash/oncodashkb#48 · Filter by author njmmatthieu opened on Mar 17, 2026 · OncodashKB 0.5 - publication
  

• handle read_excel in progress_read

  enhancement
  Feature

  oncodash/oncodashkb#47 · Filter by author njmmatthieu opened on Mar 16, 2026 · OncodashKB 0.6 - After Dark
  

• Description of the integration of OpenTargets and OmniPath networks adapters in README

  documentation
  Task

  oncodash/oncodashkb#43 · Filter by author njmmatthieu opened on Mar 16, 2026 · OncodashKB 0.5 - publication
  

• handle read_parquet in progress_read

  oncodash/oncodashkb#41 · Filter by author njmmatthieu opened on Mar 6, 2026 · OncodashKB 0.6 - After Dark
  

• Do a specific pandera adapter for some columns of snv local annotation data

  oncodash/oncodashkb#33 · Filter by author njmmatthieu opened on Nov 24, 2025
  1

  

• Having validation file for snv local in a python file and not in a yaml format

  oncodash/oncodashkb#32 · Filter by author njmmatthieu opened on Nov 24, 2025
  1

  

• change names of external annotation data adapters

  invalid
  oncodash/oncodashkb#31 · Filter by author njmmatthieu opened on Nov 24, 2025
  

• Script for anonimyzing tables should have an option to pass the separator as argument.

  enhancement
  Feature

  oncodash/oncodashkb#30 · Filter by author mbaric758 opened on Jun 20, 2025

• Check and complete the data validation sections

  documentation
  Task

  oncodash/oncodashkb#27 · Filter by author jdreo opened on Apr 23, 2025
  

• deprecated branches in oncodashkb

  question
  oncodash/oncodashkb#26 · Filter by author njmmatthieu opened on Apr 17, 2025
  

• Logging levels not being passed

  bug
  oncodash/oncodashkb#24 · Filter by author njmmatthieu opened on Mar 10, 2025
  

• Update oncodashKB adapters

  enhancement
  oncodash/oncodashkb#22 · Filter by author njmmatthieu opened on Jan 24, 2025
  1

  

• Make a release of the new sequencing pipelines

  oncodash/oncodashkb#19 · Filter by author jdreo opened on Jan 13, 2025