OMERO

Merge pull request #139 from pwalczysko/master #5

	# Builds and performs various check

	---
	name: OMERO

	on:
	push:
	pull_request:

	jobs:
	test:
	name: Test
	strategy:
	# Keep running so we can see if other tests pass
	fail-fast: false
	matrix:
	python-version:
	- '3.10'
	os:
	- ubuntu-22.04
	commands:
	- 'install'
	runs-on: ${{ matrix.os }}
	services:
	postgres:
	image: postgres:16
	env:
	POSTGRES_DB: omero
	POSTGRES_PASSWORD: omero
	POSTGRES_USER: omero
	ports:
	- 5432:5432
	# Set health checks to wait until postgres has started
	options: >-
	--health-cmd pg_isready
	--health-interval 10s
	--health-timeout 5s
	--health-retries 5
	steps:
	- uses: actions/checkout@v4
	- name: Install Ice Java and Python binding
	uses: ome/action-ice@v4
	- name: Install Python dependencies
	run: \|
	pip install flake8 tox wheel pytest
	pip install omero-server
	- name: Run flake8
	run: flake8 .
	- name: Set up OMERO config
	run: \|
	mkdir $HOME/OMERO
	echo "config set omero.data.dir $HOME/OMERO" > $HOME/config.omero
	echo "config set omero.db.name omero" >> $HOME/config.omero
	echo "config set Ice.IPv6 0" >> $HOME/config.omero
	- name: Get tox target
	id: toxtarget
	run: \|
	py=$(echo ${{ matrix.python-version }} \| tr -d .)
	echo "py=$py" >> $GITHUB_OUTPUT
	- name: Check Ice version
	run: python -c 'import Ice; print(Ice.stringVersion())'
	- name: Run tests
	run:
	tox -e py${{ steps.toxtarget.outputs.py }}
	env:
	# The hostname used to communicate with the PostgreSQL service container
	POSTGRES_HOST: localhost
	# The default PostgreSQL port
	POSTGRES_PORT: 5432
	POSTGRES_DB: omero
	POSTGRES_PASSWORD: omero
	POSTGRES_USER: omero
	TEST: ${{ matrix.commands }}

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