Description of the bug
Hello,
When I run my job, I get the following error message: * --igenomes_base (s3://ngi-igenomes/igenomes/): could not validate file format of 's3://ngi-igenomes/igenomes/': Missing plugin 'nf-amazon' required to read file: s3://ngi-igenomes/igenomes/.
It seems this is a known issue: nextflow-io/nf-schema#204. But in practical terms, how can I work around the problem? My skills are fairly limited beyond the basic pipeline settings. Do you have any idea how long it might take to resolve this issue ?
Thank you
Command used and terminal output
nextflow run main.nf -profile singularity -c ${CONFIG} -ansi-log false \
--outdir /Results \
--input samplesheet_test.csv \
--fasta hap1.sm.fasta \
--em_seq \
--cytosine_report \
--multiQC_title EMseq_test
Relevant files
ERROR ~ Validation of pipeline parameters failed!
-- Check '.nextflow.log' file for details
The following invalid input values have been detected:
- --igenomes_base (s3://ngi-igenomes/igenomes/): could not validate file format of 's3://ngi-igenomes/igenomes/': Unable to execute HTTP request: Network is unreachable
-- Check script 'subworkflows/nf-core/utils_nfschema_plugin/main.nf' at line: 68 or see '.nextflow.log' file for more details
System information
N E X T F L O W ~ version 25.04.4
Launching main.nf [nasty_borg] DSL2 - revision: c774a185d2
nf-core-methylseq_4.2.0
Container engine Singularity
Hardware HPC
Executor PBS
Description of the bug
Hello,
When I run my job, I get the following error message: * --igenomes_base (s3://ngi-igenomes/igenomes/): could not validate file format of 's3://ngi-igenomes/igenomes/': Missing plugin 'nf-amazon' required to read file: s3://ngi-igenomes/igenomes/.
It seems this is a known issue: nextflow-io/nf-schema#204. But in practical terms, how can I work around the problem? My skills are fairly limited beyond the basic pipeline settings. Do you have any idea how long it might take to resolve this issue ?
Thank you
Command used and terminal output
Relevant files
ERROR ~ Validation of pipeline parameters failed!
-- Check '.nextflow.log' file for details
The following invalid input values have been detected:
-- Check script 'subworkflows/nf-core/utils_nfschema_plugin/main.nf' at line: 68 or see '.nextflow.log' file for more details
System information
N E X T F L O W ~ version 25.04.4
Launching
main.nf[nasty_borg] DSL2 - revision: c774a185d2nf-core-methylseq_4.2.0
Container engine Singularity
Hardware HPC
Executor PBS