docs+refactor: reframe Mullenbach 2018 from benchmark to inspiration; deprecate compare_to_mullenbach #29

	name: CI

	on:
	push:
	branches: [master]
	pull_request:
	branches: [master]
	# Manual trigger with an optional debug toggle. Use this when CI failure
	# needs inner-loop visibility (pytest verbose + pre-commit --verbose +
	# mypy traceback). Matches the --log-level DEBUG contract established
	# for the CLI in src/mimic_icd_coder/cli.py.
	workflow_dispatch:
	inputs:
	log_level:
	description: "Logging verbosity for this manual run."
	type: choice
	options: [INFO, DEBUG]
	default: INFO

	jobs:
	lint-and-test:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.11"]
	env:
	# Push / pull_request runs always use INFO; workflow_dispatch runs
	# honor the user's choice. Consumed by the pytest step below.
	LOG_LEVEL: ${{ inputs.log_level \|\| 'INFO' }}
	steps:
	- uses: actions/checkout@v5

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v6
	with:
	python-version: ${{ matrix.python-version }}
	cache: pip

	- name: Install
	run: \|
	python -m pip install --upgrade pip
	pip install -e ".[dev]"

	- name: Pre-commit (lint, format, nbstripout, PHI scan, data safety)
	run: \|
	if [ "$LOG_LEVEL" = "DEBUG" ]; then
	pre-commit run --all-files --show-diff-on-failure --verbose
	else
	pre-commit run --all-files --show-diff-on-failure
	fi

	- name: Mypy
	run: \|
	if [ "$LOG_LEVEL" = "DEBUG" ]; then
	mypy src --show-traceback
	else
	mypy src
	fi

	- name: Pytest (synthetic fixtures — no MIMIC data required)
	run: \|
	if [ "$LOG_LEVEL" = "DEBUG" ]; then
	pytest -v --log-cli-level=DEBUG
	else
	pytest -q
	fi

Provide feedback