Merge pull request #180 from mcphersonlab/copilot/update-calls-for-papers-dates

Fix cfbjiegbcg deadline discrepancy and add 3 new ACS/JCTC calls for papers

Author: JacobKMcPherson

research/_callforpapers_data.py

@@ -322,6 +322,14 @@
         "website": "https://www.nature.com/collections/ihcfhcieic",
         "projects": ["https://github.com/mcphersonlab/mgx-immunol-regulatory-t-cells"]
     },
+    {
+        "journal": "Journal of Chemical Theory and Computation (JCTC)",
+        "impact": "6.4",
+        "due_date": "2026-06-01",
+        "topic": "Modeling the Impact of Protein Mutations on Chemical Reactions for Biochemistry, Protein Engineering, and Drug Discovery",
+        "website": "https://axial.acs.org/theoretical-and-computational-chemistry/call-for-papers-modeling-the-impact-of-protein-mutations-on-chemical-reactions-for-biochemistry-protein-engineering-and-drug-discovery",
+        "projects": []
+    },
     {
         "journal": "npj Digital Medicine",
         "impact": "15.1",
@@ -398,6 +406,14 @@
         "projects": ["https://github.com/mcphersonlab/ai-amr", 
                      "https://github.com/mcphersonlab/ai-forecast-pharmacology"]
     },
+    {
+        "journal": "ACS Infectious Diseases",
+        "impact": "3.8",
+        "due_date": "2026-06-30",
+        "topic": "Celebrating 80 years of the β-lactam Nobel Prize",
+        "website": "https://axial.acs.org/medicinal-chemistry/call-for-papers-celebrating-80-years-of-the-beta-lactam-nobel-prize",
+        "projects": []
+    },
     {
         "journal": "BMC Public Health",
         "impact": "4.2",
@@ -645,6 +661,14 @@
                      "https://github.com/mcphersonlab/amr-staphylococcus-aureus", 
                      "https://github.com/mcphersonlab/amr-klebsiella-pneumoniae"]
     },
+    {
+        "journal": "ACS Infectious Diseases",
+        "impact": "3.8",
+        "due_date": "2026-09-01",
+        "topic": "Emerging Tools for Infection Diagnosis, Prognosis, and Spread Control",
+        "website": "https://axial.acs.org/medicinal-chemistry/call-for-papers-emerging-tools-for-infection-diagnosis-prognosis-and-spread-control",
+        "projects": []
+    },
     {
         "journal": "BMC Artificial Intelligence",
         "impact": "4.6",

research/projects.qmd

@@ -59,9 +59,9 @@ Visit our [GitHub Organization](https://github.com/McPhersonLab):
 | [mgx-abx-healthy](https://github.com/mcphersonlab/mgx-abx-healthy) | Antibiotic effects on healthy gut microbiome | [BSAC and GARDP Antimicrobial Chemotherapy Conference](https://acc-conference.com/)<br><em>Abstract: TBD</em> | **[Nature Microbiology/Nature Medicine](https://www.nature.com/collections/cajbgagjib)**<br><em>Deadline: March 11, 2026</em> | Nature Communications |
 | [mgx-clostridioides-difficile](https://github.com/mcphersonlab/mgx-clostridioides-difficile) | Metagenomic analysis of C. difficile | [Houston *C diff* & Microbiome Conference](https://www.uh.edu/pharmacy/news-and-events/events/houston-cdiff-and-microbiome-conference/)<br><em>Abstract: TBD</em> | **[Nature Microbiology/Nature Medicine](https://www.nature.com/collections/cajbgagjib)**<br><em>Deadline: March 11, 2026</em> | Nature Microbiology |
 | [mgx-mbx-abx-cdi](https://github.com/mcphersonlab/mgx-mbx-abx-cdi) | Metagenomic and metabolomic determinants of CDI | [Houston *C diff* & Microbiome Conference](https://www.uh.edu/pharmacy/news-and-events/events/houston-cdiff-and-microbiome-conference/)<br><em>Abstract: TBD</em> | **[Nature Microbiology/Nature Medicine](https://www.nature.com/collections/cajbgagjib)**<br><em>Deadline: March 11, 2026</em> | Nature Microbiology |
-| [amr-acinetobacter-baumannii](https://github.com/mcphersonlab/amr-acinetobacter-baumannii) | Carbapenem-resistant *A. baumannii* | [IMARI Annual](https://imari.org)<br><em>Abstract: TBD</em> | **[npj Antimicrobials and Resistance](https://www.nature.com/collections/cfbjiegbcg)**<br><em>Deadline: March 24, 2026</em> | Nature Microbiology |
-| [amr-enterococcus-faecium](https://github.com/mcphersonlab/amr-enterococcus-faecium) | VRE genomics and resistance | [TMC AMR](https://www.tmc.edu/events/)<br><em>Abstract: TBD</em> | **[npj Antimicrobials and Resistance](https://www.nature.com/collections/cfbjiegbcg)**<br><em>Deadline: March 24, 2026</em> | Journal of Antimicrobial Chemotherapy |
-| [amr-klebsiella-pneumoniae](https://github.com/mcphersonlab/amr-klebsiella-pneumoniae) | Carbapenem-resistant *K. pneumoniae* | [IDSA IDWeek](https://www.idweek.org/); [ESCMID Annual](https://www.escmid.org/congress-events/escmid-global/)<br><em>Abstract: TBD</em> | **[npj Antimicrobials and Resistance](https://www.nature.com/collections/cfbjiegbcg)**<br><em>Deadline: March 24, 2026</em> | Nature Microbiology |
+| [amr-acinetobacter-baumannii](https://github.com/mcphersonlab/amr-acinetobacter-baumannii) | Carbapenem-resistant *A. baumannii* | [IMARI Annual](https://imari.org)<br><em>Abstract: TBD</em> | **[npj Antimicrobials and Resistance](https://www.nature.com/collections/cfbjiegbcg)**<br><em>Deadline: June 24, 2026</em> | Nature Microbiology |
+| [amr-enterococcus-faecium](https://github.com/mcphersonlab/amr-enterococcus-faecium) | VRE genomics and resistance | [TMC AMR](https://www.tmc.edu/events/)<br><em>Abstract: TBD</em> | **[npj Antimicrobials and Resistance](https://www.nature.com/collections/cfbjiegbcg)**<br><em>Deadline: June 24, 2026</em> | Journal of Antimicrobial Chemotherapy |
+| [amr-klebsiella-pneumoniae](https://github.com/mcphersonlab/amr-klebsiella-pneumoniae) | Carbapenem-resistant *K. pneumoniae* | [IDSA IDWeek](https://www.idweek.org/); [ESCMID Annual](https://www.escmid.org/congress-events/escmid-global/)<br><em>Abstract: TBD</em> | **[npj Antimicrobials and Resistance](https://www.nature.com/collections/cfbjiegbcg)**<br><em>Deadline: June 24, 2026</em> | Nature Microbiology |
 | [ai-amr](https://github.com/mcphersonlab/ai-amr) | AI methods for antimicrobial resistance prediction | [IMARI Annual](https://imari.org)<br><em>Abstract: TBD</em> | **[ACS Infectious Diseases](https://axial.acs.org/medicinal-chemistry/call-for-papers-artificial-intelligence-for-next-generation-anti-infective-discovery)**<br><em>Deadline: April 01, 2026</em> | Nature Machine Intelligence |
 | [MicroSCOPE](https://github.com/mcphersonlab/MicroSCOPE) | Microbial speciation from colony observation and prediction | [ASM Microbe](https://asm.org/events/asm-microbe)<br><em>Abstract: TBD</em> | **[npj Antimicrobials and Resistance](https://www.nature.com/collections/eecajaidbe)**<br><em>Deadline: April 07, 2026</em> | Nature Microbiology |
 | [ai-forecast-influenza](https://github.com/mcphersonlab/ai-forecast-influenza) | AI forecasting of influenza dynamics | [ASV Annual](https://www.asv.org/annual-meeting)<br><em>Abstract: TBD</em> | **[npj Digital Medicine/npj Digital Public Health](https://www.nature.com/collections/jaibcfdhef)**<br><em>Deadline: May 15, 2026</em> | The Lancet Infectious Diseases |