NGS Data Analysis Course Day 1 Introduction to Linux systems Slides Introduction to NGS technologies Slides Quality control for NGS raw data Slides - Practical exercise - Data Mapping reads to a reference genome Slides - Practical exercise Day 2 Visualization of NGS data Slides || Practical exercise 1 || Practical exercise 2 Variant calling Slides || Practical exercise 1 || Practical exercise 2 || Practical exercise 3 Variant annotation Slides || Practical exercise 1 Day 3 Association studies RNA-Seq data processing RNA-Seq data analysis Functional analysis