You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
- ✅ **27th Dec 2024** - Updated repository with scripts to reproduce results from the manuscript.
10
12
- 🚧 **TODO** - Add prediction codes for models using 3D-structural features.
11
13
14
+
---
15
+
12
16
## 📚 Table of Contents
13
17
14
18
-[Google Colab Interface](#colab-interface)
@@ -21,10 +25,14 @@
21
25
-[License](#license)
22
26
-[Citations](#citations)
23
27
28
+
---
29
+
24
30
## 🌐 Google Colab Interface <aname="colab-interface"></a>
25
31
26
32
For ease of use without any hardware requirements, a Google Colab interface is available here: [tiny.cc/catpred](http://tiny.cc/catpred). It contains sample data, instructions, and installation all in the Colab notebook.
27
33
34
+
---
35
+
28
36
## 💻 Local Installation <aname="local-installation"></a>
29
37
30
38
If you would like to install the package on a local machine, please follow the instructions below.
@@ -103,6 +111,8 @@ Run using:
103
111
104
112
For all results pertaining to CatPred, UniKP, DLKcat, and Baseline models, this method trains everything from scratch. Then, it uses the trained checkpoints to make predictions and analyzes them to reproduce results of the publications, including all main and supplementary figures.
105
113
114
+
---
115
+
106
116
## 🙏 Acknowledgements <a name="acknw"></a>
107
117
108
118
We thank the authors of the following open-source repositories:
@@ -111,10 +121,14 @@ We thank the authors of the following open-source repositories:
111
121
- **Rotary PyTorch** - The rotary positional embeddings functionality for Seq-Attn. is from [Rotary PyTorch](https://github.com/lucidrains/rotary-embedding-torch).
112
122
- **Progres** - Protein Graph Embedding Search using pre-trained EGNN models from [Progres](https://github.com/greener-group/progres.git).
113
123
124
+
---
125
+
114
126
## 📜 License <a name="license"></a>
115
127
116
128
This source code is licensed under the MIT license found in the `LICENSE` file in the root directory of this source tree.
117
129
130
+
---
131
+
118
132
## 📖 Citations <a name="citations"></a>
119
133
120
134
If you find the models useful in your research, we ask that you cite the relevant paper:
0 commit comments