OpenMedicine-PytorchCompiler-v2/tox.ini at main · llamasearchai/OpenMedicine-PytorchCompiler-v2 · GitHub

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[tox]
min_version = 4.0
requires =
    py
isolated_build = true
env_list =
    lint,
    type,
    unit,
    integration,
    perf,
    security,
    docs,
    package,
    docker

[testenv]
description = "Run tests with pytest"
package = editable
extras =
    test
pass_env =
    HOME
    USER
    DEVICE
    OPENAI_API_KEY
    GITHUB_*
set_env =
    MPLBACKEND = agg
    PYTHONPATH = {toxinidir}
allowlist_externals =
    pytest
    docker
commands =
    pytest {posargs}

[testenv:lint]
description = "Check code style and quality"
extras =
    lint
commands =
    ruff check healthcare_ai tests
    black --check healthcare_ai tests
    flake8 healthcare_ai tests

[testenv:type]
description = "Run static type checking"
extras =
    lint
commands =
    mypy healthcare_ai

[testenv:unit]
description = "Run unit tests"
commands =
    pytest -m "not (integration or gpu or slow)" {posargs}

[testenv:integration]
description = "Run integration tests"
extras =
    test
commands =
    pytest -m "integration" {posargs}

[testenv:perf]
description = "Run performance benchmarks"
extras =
    test
commands =
    pytest -m "performance" {posargs}

[testenv:security]
description = "Run security checks"
extras =
    dev
commands =
    bandit -r healthcare_ai
    safety check

[testenv:docs]
description = "Build documentation"
extras =
    docs
commands =
    sphinx-build -b html docs/source docs/build/html

[testenv:package]
description = "Build the package"
package = wheel
commands =
    python -m twine check dist/*

[testenv:gpu]
description = "Run tests on GPU"
extras =
    test
    gpu
commands =
    pytest -m "gpu" {posargs}

[testenv:docker]
description = "Run tests within a Docker container"
allowlist_externals =
    docker
commands =
    docker build -t openmedicine-test .
    docker run openmedicine-test pytest {posargs}