[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Author: pre-commit-ci[bot]

src/obnb/data/annotation/diseases.py

@@ -14,7 +14,8 @@ class DISEASESAnnotation(BaseAnnotationData):
     This is the ``integrated`` disease annotation channel from the Jensen Lab
     DISEASES annotation database, which combines evidences from *text-mining*,
     *knowledge*, and *experiment* channels. See  the
-    `DISEASES <https://diseases.jensenlab.org/About>`_ webpage for more
+    `DISEASES <https://diseases.jensenlab.org/About>`_
+    webpage for more
     information
 
     """

src/obnb/graph/ontology.py

@@ -26,11 +26,11 @@
 class OntologyGraph(DirectedSparseGraph):
     """Ontology graph.
 
-    An ontology graph is a directed acyclic graph (DAG). Here, we represent
-    this data type using DirectedSparseGraph, which keeps track of both the
-    forward direction of edges (``_edge_data``) and the reversed direction of
-    edges (``_rev_edge_data``). This bidirectional awareness is useful in the
-    context of propagating information "upwards" or "downloads".
+    An ontology graph is a directed acyclic graph (DAG). Here, we represent this
+    data type using DirectedSparseGraph, which keeps track of both the forward
+    direction of edges (``_edge_data``) and the reversed direction of edges
+    (``_rev_edge_data``). This bidirectional awareness is useful in the context
+    of propagating information "upwards" or "downloads".
 
     The ``idmap`` attribute is swapped with a more functional ``IDProp`` object
     that allows the storing of node information such as the name and the node

test/test_graph.py

@@ -1079,21 +1079,11 @@ def test_ancestors(self):
         self.assertEqual(graph.ancestors("f"), {"a", "c", "d"})
 
     def test_restrict_to_branch(self):
-        r"""
-
-        a
-        | \
-        b   d
-        |   |     \
-        c   e [z]   f [x, y]
-
-        |
-        V
+        r"""A | \ b   d |   |     \ c   e [z]   f [x, y]
 
-        d
-        |    \
-        e [z]  f [x, y]
+        | V
 
+        d |    \ e [z]  f [x, y]
 
         """
         graph = OntologyGraph()