Skip to content

RuntimeError(msg) #46

Description

@HamidArianZad

Dear NeNeS establishers,

During introducing my own lattice in tenes_simple file I got some errors in tenes_std lines. Please let me know where is the problem and how can I fix this problem.

My own lattice structure is as below figure:

Martini_Kagome_1

The code that I reformed in tenes_simple file is as following:

class KagomeLattice(Lattice):
    def __init__(self, param: Dict[str, Any]):
        super().__init__(param)
        self.type = "kagome lattice"
        self.z = 3

        self.L *= 2
        self.W *= 2

        L, W = self.L, self.W

        self.latticevector = np.array([[1.0, 0.0], [0.5, np.sqrt(3.0) / 2]])
        self.latticevector *= np.array([[L], [W]])

        a0 = np.array([1.0, 0.0])
        a1 = np.array([0.5, np.sqrt(3.0) / 2])
 
        vd = self.vdim
        self.sublattice.append(SubLattice([1, vd, vd, 1]))
        self.sublattice.append(SubLattice([1, 1, vd, vd]))
        self.sublattice.append(SubLattice([vd, 1, 1, vd]))
        self.sublattice.append(SubLattice([vd, vd, 1, 1]))
      
        # Martini lattice 1: 
        for index in range(L * W):
            x, y = index2coord(index, L)

            if x % 2 == 0 and y % 2 == 0:
                #
                # sublattice A
                #
                self.sublattice[0].add_site(index)
                self.coords.append(a0 * x + a1 * y)

                # 1st neighbors
                self.bonds[0][0].append(Bond(index, 1, 0))
                self.bonds[0][0].append(Bond(index, 0, 1))

            elif x % 2 == 1 and y % 2 == 0:
                #
                # sublattice B
                #
                self.sublattice[1].add_site(index)
                self.coords.append(a0 * x + a1 * y)

                # 1st neighbors
                self.bonds[0][1].append(Bond(index, 0, 1))
                self.bonds[0][0].append(Bond(index, -1, 1))

            elif x % 2 == 0 and y % 2 == 1:
                #
                # sublattice C
                #
                self.sublattice[2].add_site(index)
                self.coords.append(a0 * x + a1 * y)

                # 1st neighbors
                self.bonds[0][1].append(Bond(index, -1, 0))

            elif x % 2 == 1 and y % 2 == 1:
                #
                # sublattice D
                #
                self.sublattice[3].add_site(index)
                self.coords.append(a0 * x + a1 * y)

                # 1st neighbors
                self.bonds[0][1].append(Bond(index, 1, 1))


    def cartesian_coordinate(self, x: int, y: int) -> np.ndarray:
        a0 = np.array([1.0, 0.0])
        a1 = np.array([0.5, np.sqrt(3.0) / 2])
        return a0 * x + a1 * y 

In fact, when I consider following sequence for virtual_dim in Sublattices (full connection) everything works normally and I could calculate the magnetization,

self.sublattice.append(SubLattice([vd, vd, vd, vd]))
self.sublattice.append(SubLattice([vd, vd, vd, vd]))
self.sublattice.append(SubLattice([vd, vd, vd, vd]))
self.sublattice.append(SubLattice([vd, vd, vd, vd]))

But my own lattice has just three connections which two of them are counted as virtual_dim. So, I considered below sequence for the virtual_dim of Sublattices:

self.sublattice.append(SubLattice([1, vd, vd, 1]))
self.sublattice.append(SubLattice([1, 1, vd, vd]))
self.sublattice.append(SubLattice([vd, 1, 1, vd]))
self.sublattice.append(SubLattice([vd, vd, 1, 1]))

and I got following error:

martini2.py > output.dat
Traceback (most recent call last):
  File "/home/arian/bin/tenes_std", line 903, in <module>
    model = Model(param)
  File "/home/arian/bin/tenes_std", line 726, in __init__
    self.unitcell = Unitcell(param["tensor"])
  File "/home/arian/bin/tenes_std", line 218, in __init__
    self.load_dict(lat_dict)
  File "/home/arian/bin/tenes_std", line 239, in load_dict
    self.check()
  File "/home/arian/bin/tenes_std", line 360, in check
    raise RuntimeError(msg)
RuntimeError: ERROR: some sites have problems
[INPUT ERROR]
ERROR: cannot find the input file: input_0_500.toml

Traceback (most recent call last):
  File "magnetization_martini2.py", line 50, in <module>
    with open(join("output_{}_{}".format(idx, num_step), "density.dat")) as f:
FileNotFoundError: [Errno 2] No such file or directory: 'output_0_500/density.dat'`

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type
    No fields configured for issues without a type.

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions