Skip to content

error from biothings client #9

Description

@coleslaw481

When running from docker container in python 3.9 getting this error:

docker run --platform linux/amd64 --rm -v `pwd`:`pwd` idekerlab/cellmaps_ppidownloader:0.2.2 `pwd`/testxx --edgelist `pwd`/examples/edgelist.tsv --baitlist `pwd`/examples/baitlist.tsv --provenance `pwd`/examples/provenance.json
Get updated gene symbols: 100%|██████████| 2/2 [00:03<00:00,  1.54s/steps]
Exception ignored in: <function BiothingClient.__del__ at 0x7fffdc762f70>
Traceback (most recent call last):
  File "/usr/local/lib/python3.9/site-packages/biothings_client/client/base.py", line 256, in __del__
  File "/usr/local/lib/python3.9/logging/__init__.py", line 1481, in exception
  File "/usr/local/lib/python3.9/logging/__init__.py", line 1475, in error
  File "/usr/local/lib/python3.9/logging/__init__.py", line 1589, in _log
  File "/usr/local/lib/python3.9/logging/__init__.py", line 1599, in handle
  File "/usr/local/lib/python3.9/logging/__init__.py", line 1661, in callHandlers
  File "/usr/local/lib/python3.9/logging/__init__.py", line 952, in handle
  File "/usr/local/lib/python3.9/logging/__init__.py", line 1186, in emit
  File "/usr/local/lib/python3.9/logging/__init__.py", line 1175, in _open
NameError: name 'open' is not defined

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type
    No fields configured for issues without a type.

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions