Option --full doesn't work correctly

[PKazakova]

Hello, @tanghaibao!

I run run.py with option --full and without this option and I got absolutely identical results: only 4-digits (as default). Can option --full work correctly? Can you help with this problem?

Kind regards,
Polina

[serge2016]

Hi. Any news?

[VErconi]

Hi,

Just following up on this issue.
I'm experiencing the same problem of Polina and Serge.

Please, send help :)
Veronica

[Stikus]

As we can see in code:

if [ "$FULL" = true ]; then
    $BIN/full.r $OUT/${ID}.tsv.dna $OUT/${ID}.hla $OUT/${ID}.hla.full
fi

running with --full only run one extra script full.r and not modify base output. You can try to use this extra .hla.full output file.