paper-talin-loop/only-figures.qmd at main · graeter-group/paper-talin-loop · GitHub

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---
title: "Intrinsically disordered region of talin's FERM domain functions as an initial PIP~2~ recognition site"
date: today
date-format: long
published-title: Last Updated
author:
  - name: Jannik Buhr
    url: https://jmbuhr.de
    orcid: 0000-0002-9350-2629
    affiliations:
      - id: hits
        name: Heidelberg Institute for Theoretical Studies
        url: https://www.h-its.org/
      - id: iwr
        name: Interdisciplinary Center for Scientific Computing, Heidelberg University
        url: https://typo.iwr.uni-heidelberg.de/home
  - name: Florian Franz
    affiliations:
      - ref: hits
      - ref: iwr
  - name: Frauke Gräter
    url: https://www.h-its.org/people/prof-dr-frauke-grater/
    orcid: 0000-0003-2891-3381
    email: 'Frauke.Graeter@h-its.org'
    affiliations:
      - ref: hits
      - ref: iwr
repo-url: https://github.com/hits-mbm-dev/paper-talin-loop/
github: https://github.com/hits-mbm-dev/
repo: "paper-talin-loop"
format:
  bj-pdf:
    classoption:
      - twocolumn
    include-in-header:
      text: |
        \usepackage[labelformat=empty]{caption}
        \usepackage[labelformat=parens]{subcaption}
colorlinks: true
link-citations: true
# number-sections: true
citation:
  type: article
  citation-key: buhrTalin2022
  status: draft
editor_options:
  markdown:
    wrap: sentence
editor: source
bibliography: references.bib
crossref:
  subref-labels: alpha A
  ref-hyperlink: false
---

\newpage
\clearpage

::::{#fig-structure layout="[[1], [1,1]]"}
![ ](./assets/blender/render/frame0000-label.png){#fig-tln-schema-long}

![ ](./assets/blender/render/frame0001.png){#fig-tln-schema-autoinhib}

![ ](./assets/blender/render-align/frame0000.png){#fig-tln-align-autoinhib}


::::


\newpage
\clearpage

:::::{#fig-loop-importance layout="[[1],[1]]"}
:::{#fig-f0f1-snapshots}
![](./assets/vmd/f0f1/unbround-trim.png){width=30%}
![](./assets/vmd/f0f1/anchored-trim.png){width=30%}
![](./assets/vmd/f0f1/bound-trim.png){width=30%}


:::
![ ](./results/plots/f0f1-ri-angle-npip-1.png){#fig-f0f1-ri-angle}


:::::


\newpage
\clearpage


::::: {#fig-loop-importance-2 layout="[[1],[1]]"}
![ ](./results/plots/f0f1-angle-frame-npip-1.png){#fig-f0f1-angle-frame}

![ ](./results/plots/f0f1-retention-1.png){#fig-f0f1-retention}


:::::


\newpage
\clearpage


::::: {#fig-f0f1-residues layout="[[1],[1]]"}
![ ](./results/plots/f0f1-ri-npip-1.png){#fig-f0f1-ri-npip}

![ ](./assets/vmd/f0f1/residues.png){#fig-f1f1-residues width=20%}


:::::


\newpage
\clearpage

:::: {#fig-f0f1-vert-pull layout="[[1],[1,1]]"}
:::{#fig-f0f1-pull-run-1}
::: {.content-hidden when-format="html"}
![](./assets/vmd/f0f1-pulling/f0f1-pull-start.png){width=35%}
![](./assets/vmd/f0f1-pulling/f0f1-pull-middle.png){width=20%}
![](./assets/vmd/f0f1-pulling/f0f1-pull-end.png){width=35%}
:::


:::
![ ](./results/plots/f0f1-vert-pull-1.png){#fig-f0f1-vert-pull-force}

![ ](./results/plots/f0f1-vert-pull-contacts-time-1.png){#fig-f0f1-vert-pull-contacts}


::::


\newpage
\clearpage

:::: {#fig-ferm-further layout="[[1],[1]]"}
![ ](./results/plots/ferm-ri-npip-1.png){#fig-ferm-ri-npip}

![ ](./assets/vmd/ferm/ferm-residues-transparent-arrows.png){#fig-ferm-memb-system}


::::


\newpage
\clearpage