RMAExpress/Makefile.msw at master · bmbolstad/RMAExpress · GitHub

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### file: Makefile.msw
###
### This Makefile is for compiliation on a Windows machine
### using MinGW/MSYS etc
###
###
###

WXINCLUDE = `wxmsw-2.4-config --cppflags` -I/usr/local/include
WXLIB = `wxmsw-2.4-config --libs`

WXBASEINCLUDE = `wxbase-2.4-config --cppflags` -I/usr/local/include
WXBASELIB = `wxbase-2.4-config --libs`

COMPILERFLAGS = -g -O2

CC = g++

all: RMAExpress convertor


RMAExpress: RMAExpress.cpp ResidualsDataGroup.o DataGroup.o  PMProbeBatch.o expressionGroup.o rma_background3.o PreferencesDialog.o residualimages.o
	$(CC) $(COMPILERFLAGS) RMAExpress.cpp  $(WXINCLUDE) pnorm.o weightedkerneldensity.o rma_background3.o threestep_common.o medianpolish.o expressionGroup.o PMProbeBatch.o Matrix.o BufferedMatrix.o read_cdf_xda.o DataGroup.o CDFLocMapTree.o rma_common.o qnorm.o PreferencesDialog.o residualimages.o ResidualsDataGroup.o $(WXLIB)  -o RMAExpress.exe

convertor: RMADataConv.cpp DataGroup.o
	$(CC) $(COMPILERFLAGS) RMADataConv.cpp Matrix.o read_cdf_xda.o BufferedMatrix.o PreferencesDialog.o DataGroup.o CDFLocMapTree.o $(WXINCLUDE) $(WXLIB) -o RMADataConv.exe


ResidualsDataGroup.o: DataGroup.o ResidualsDataGroup.cpp
	$(CC) -c $(COMPILERFLAGS) ResidualsDataGroup.cpp $(WXINCLUDE) -o ResidualsDataGroup.o

DataGroup.o: DataGroup.cpp CDFLocMapTree.cpp Matrix.o BufferedMatrix.o read_cdf_xda.o
	$(CC) -c $(COMPILERFLAGS) DataGroup.cpp $(WXINCLUDE) -o DataGroup.o
	$(CC) -c $(COMPILERFLAGS) CDFLocMapTree.cpp $(WXINCLUDE) -o CDFLocMapTree.o

PMProbeBatch.o: PMProbeBatch.cpp qnorm.o medianpolish.o
	$(CC) -c $(COMPILERFLAGS) PMProbeBatch.cpp $(WXINCLUDE) -o PMProbeBatch.o

qnorm.o: qnorm.c rma_common.c
	$(CC) -c $(COMPILERFLAGS) qnorm.c $(WXINCLUDE) -o qnorm.o
	$(CC) -c $(COMPILERFLAGS) rma_common.c $(WXINCLUDE) -o rma_common.o

medianpolish.o: medianpolish.c
	$(CC) -c $(COMPILERFLAGS) medianpolish.c $(WXINCLUDE) -o medianpolish.o

expressionGroup.o: expressionGroup.cpp
	$(CC) -c $(COMPILERFLAGS) expressionGroup.cpp $(WXINCLUDE) -o expressionGroup.o
	$(CC) -c $(COMPILERFLAGS) threestep_common.c $(WXINCLUDE) -o threestep_common.o

rma_background3.o: rma_background3.c pnorm.c weightedkerneldensity.c
	$(CC) -c $(COMPILERFLAGS) pnorm.c  $(WXINCLUDE) -o pnorm.o
	$(CC) -c $(COMPILERFLAGS) weightedkerneldensity.c  $(WXINCLUDE) -o weightedkerneldensity.o
	$(CC) -c $(COMPILERFLAGS) rma_background3.c $(WXINCLUDE) -o rma_background3.o

Matrix.o: Matrix.cpp
	$(CC) -c $(COMPILERFLAGS) Matrix.cpp  $(WXINCLUDE) -o Matrix.o

PreferencesDialog.o: PreferencesDialog.cpp
	$(CC) -c $(COMPILERFLAGS) PreferencesDialog.cpp  $(WXINCLUDE)


residualimages.o: residualimages.cpp
	$(CC) -c $(COMPILERFLAGS) residualimages.cpp  $(WXINCLUDE) -o residualimages.o

read_cdf_xda.o: read_cdf_xda.c
	$(CC) -c $(COMPILERFLAGS) read_cdf_xda.c $(WXINCLUDE) -o read_cdf_xda.o

BufferedMatrix.o:  BufferedMatrix.cpp
	$(CC) -c $(COMPILERFLAGS) BufferedMatrix.cpp


src:
	tar c Makefile* *.c* *.h *.rc COPYING > RMAExpress_src.tar
	gzip RMAExpress_src.tar


console: RMAExpressConsole.cpp DataGroupBase.o MatrixBase.o PMProbeBatchBase.o  expressionGroupBase.o rma_background3Base.o read_cdf_xdaBase.o BufferedMatrixBase.o PreferencesDialogBase.o
	$(CC) $(COMPILERFLAGS) RMAExpressConsole.cpp  pnormBase.o weightedkerneldensityBase.o rma_background3Base.o MatrixBase.o  rma_commonBase.o threestep_commonBase.o  expressionGroupBase.o medianpolishBase.o qnormBase.o PMProbeBatchBase.o read_cdf_xdaBase.o BufferedMatrixBase.o PreferencesDialogBase.o DataGroupBase.o CDFLocMapTreeBase.o $(WXBASEINCLUDE) $(WXBASELIB) -o RMAExpressConsole.exe

DataGroupBase.o: DataGroup.cpp PreferencesDialogBase.o
	$(CC) -c $(COMPILERFLAGS) DataGroup.cpp $(WXBASEINCLUDE) -o DataGroupBase.o
	$(CC) -c $(COMPILERFLAGS) CDFLocMapTree.cpp $(WXBASEINCLUDE) -o CDFLocMapTreeBase.o

MatrixBase.o: Matrix.cpp
	$(CC) -c $(COMPILERFLAGS) Matrix.cpp  $(WXBASEINCLUDE) -o MatrixBase.o

PMProbeBatchBase.o: PMProbeBatch.cpp qnormBase.o medianpolishBase.o
	$(CC) -c $(COMPILERFLAGS) PMProbeBatch.cpp $(WXBASEINCLUDE) -o PMProbeBatchBase.o

qnormBase.o: qnorm.c rma_common.c
	$(CC) -c $(COMPILERFLAGS) qnorm.c $(WXBASEINCLUDE) -o qnormBase.o
	$(CC) -c $(COMPILERFLAGS) rma_common.c $(WXBASEINCLUDE) -o rma_commonBase.o

medianpolishBase.o: medianpolish.c
	$(CC) -c $(COMPILERFLAGS) medianpolish.c $(WXBASEINCLUDE) -o medianpolishBase.o

expressionGroupBase.o: expressionGroup.cpp
	$(CC) -c $(COMPILERFLAGS) expressionGroup.cpp $(WXBASEINCLUDE) -o expressionGroupBase.o
	$(CC) -c $(COMPILERFLAGS) threestep_common.c $(WXBASEINCLUDE) -o threestep_commonBase.o

rma_background3Base.o: rma_background3.c pnorm.c weightedkerneldensity.c
	$(CC) -c $(COMPILERFLAGS) pnorm.c  $(WXBASEINCLUDE) -o pnormBase.o
	$(CC) -c $(COMPILERFLAGS) weightedkerneldensity.c  $(WXBASEINCLUDE) -o weightedkerneldensityBase.o
	$(CC) -c $(COMPILERFLAGS) rma_background3.c $(WXBASEINCLUDE) -o rma_background3Base.o

read_cdf_xdaBase.o: read_cdf_xda.c
	$(CC) -c $(COMPILERFLAGS) read_cdf_xda.c $(WXBASEINCLUDE) -o read_cdf_xdaBase.o

PreferencesDialogBase.o: PreferencesDialog.cpp
	$(CC) -c $(COMPILERFLAGS) PreferencesDialog.cpp  $(WXBASEINCLUDE) -o PreferencesDialogBase.o

BufferedMatrixBase.o:  BufferedMatrix.cpp
	$(CC) -c $(COMPILERFLAGS) BufferedMatrix.cpp $(WXBASEINCLUDE) -o BufferedMatrixBase.o