Skip to content

Commit b6d005d

Browse files
daichengxindaichengxin
committed
update
1 parent eebe255 commit b6d005d

12 files changed

Lines changed: 10 additions & 257 deletions

File tree

‎modules/local/openms/generate_decoy_database/main.nf‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -3,8 +3,8 @@ process GENERATE_DECOY_DATABASE {
33
label 'openms'
44

55
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
6-
'oras://ghcr.io/bigbio/openms-tools-thirdparty-sif:2025.04.14' :
7-
'ghcr.io/bigbio/openms-tools-thirdparty:2025.04.14' }"
6+
'oras://ghcr.io/bigbio/openms-tools-thirdparty-sif:2026.06.06' :
7+
'ghcr.io/bigbio/openms-tools-thirdparty:2026.06.06' }"
88

99
input:
1010
path(db_for_decoy)

‎modules/local/openms/id_score_switcher/main.nf‎

Lines changed: 0 additions & 37 deletions
This file was deleted.

‎modules/local/openms/id_score_switcher/meta.yml‎

Lines changed: 0 additions & 39 deletions
This file was deleted.

‎modules/local/openms/protein_quantifier/main.nf‎

Lines changed: 0 additions & 52 deletions
This file was deleted.

‎modules/local/openms/protein_quantifier/meta.yml‎

Lines changed: 0 additions & 40 deletions
This file was deleted.

‎modules/local/utils/msrescore_features/main.nf‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -3,8 +3,8 @@ process MSRESCORE_FEATURES {
33
label 'process_medium'
44

55
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
6-
'oras://ghcr.io/bigbio/quantms-rescoring-sif:0.0.18' :
7-
'ghcr.io/bigbio/quantms-rescoring:0.0.18' }"
6+
'oras://ghcr.io/bigbio/quantms-rescoring-sif:0.0.19' :
7+
'ghcr.io/bigbio/quantms-rescoring:0.0.19' }"
88

99
input:
1010
tuple val(meta), path(id_files), path(mzml), path(model_weight)

‎modules/local/utils/msrescore_fine_tuning/main.nf‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -3,8 +3,8 @@ process MSRESCORE_FINE_TUNING {
33
label 'process_high'
44

55
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
6-
'oras://ghcr.io/bigbio/quantms-rescoring-sif:0.0.18' :
7-
'ghcr.io/bigbio/quantms-rescoring:0.0.18' }"
6+
'oras://ghcr.io/bigbio/quantms-rescoring-sif:0.0.19' :
7+
'ghcr.io/bigbio/quantms-rescoring:0.0.19' }"
88

99
input:
1010
tuple val(meta), path(idparquet), path(mzml), path(ms2_model_dir)

‎modules/local/utils/psm_clean/main.nf‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -3,8 +3,8 @@ process PSM_CLEAN {
33
label 'process_high'
44

55
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
6-
'oras://ghcr.io/bigbio/quantms-rescoring-sif:0.0.18' :
7-
'ghcr.io/bigbio/quantms-rescoring:0.0.18' }"
6+
'oras://ghcr.io/bigbio/quantms-rescoring-sif:0.0.19' :
7+
'ghcr.io/bigbio/quantms-rescoring:0.0.19' }"
88

99
input:
1010
tuple val(meta), path(idparquet), path(mzml)

‎modules/local/utils/psm_conversion/main.nf‎

Lines changed: 0 additions & 36 deletions
This file was deleted.

‎modules/local/utils/psm_conversion/meta.yml‎

Lines changed: 0 additions & 34 deletions
This file was deleted.

0 commit comments

Comments
 (0)