open-pedigree/localEditor.html at master · aehrc/open-pedigree · GitHub

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<!DOCTYPE html>
<html>
  <head>
    <meta charset="UTF-8">
    <title>Open Pedigree by PhenoTips&reg;</title>
    <link rel="icon" type="image/png" href="dist/assets/open-pedigree-icon.png">

    <!-- Open Pedigree bundle -->
    <script type="text/javascript" src="dist/pedigree.min.js"></script>

  </head>

  <body id='body'>
  <script type="text/javascript">

    function getParameterByName(name, url) {
      if (!url) url = window.location.href;
      name = name.replace(/[\[\]]/g, '\\$&');
      var regex = new RegExp('[?&]' + name + '(=([^&#]*)|&|#|$)'),
              results = regex.exec(url);
      if (!results) return null;
      if (!results[2]) return '';
      return decodeURIComponent(results[2].replace(/\+/g, ' '));
    };

    var editor;

    document.addEventListener('DOMContentLoaded', function() {
      var ontologyServer = getParameterByName('ontologyServer') || 'https://tx.ontoserver.csiro.au/fhir/';

      var mode = getParameterByName('mode');
      if (mode === 'SCT') {
        OpenPedigree.setFHIRTerminology('disorder', ontologyServer, 'http://snomed.info/sct',
                'http://snomed.info/sct?fhir_vs=refset/32570581000036105', /[0-9]+/, 20);
        OpenPedigree.setFHIRTerminology('phenotype', ontologyServer, 'http://snomed.info/sct',
                'http://ga4gh.org/fhir/ValueSet/phenotype', /[0-9]+/, 20);
        OpenPedigree.setFHIRTerminology('gene', ontologyServer, 'http://purl.bioontology.org/ontology/HGNC/hgnc.owl',
                'http://www.genenames.org', /[0-9]+/, 20);
      }
      else {
        OpenPedigree.setFHIRTerminology('disorder', ontologyServer, 'http://www.omim.org',
                'http://www.omim.org/vs', /[0-9]+/, 20);
        OpenPedigree.setFHIRTerminology('phenotype', ontologyServer, 'http://purl.obolibrary.org/obo/hp.owl',
                'http://purl.obolibrary.org/obo/hp.owl?vs', /^(http:\/\/)|(HP:)/, 20);
        OpenPedigree.setFHIRTerminology('gene', ontologyServer, 'http://purl.bioontology.org/ontology/HGNC/hgnc.owl',
                'http://www.genenames.org', /[0-9]+/, 20);
      }
      console.log("creating editor");

      var editorOptions = {patientDataUrl: 'local:pedigreeData?format=fhir&closeOnSave=true',
                           returnUrl: '#CloseWindow'};


      editor = OpenPedigree.initialiseEditor(editorOptions);

    });
  </script>
  </body>
</html>