Hi,
FOA thanks for developing this package and the detailed replies to GitHub Issues.
I have a question commented in here (#110 (comment)).
The documentation states cutsite_width is "the number of nucleotides to the left and right of the cutsite location that indels can appear in.".
If my target sites were of 10 nucleotides each (separated by 15 nucleotides), should I set that parameter (i) to 10 (the width of the target), (ii) to 5 (the nucleotides from the middle to the extreme of the target) or actually (iii) to 15 because it refers to the length of the linker (I suppose this is the context_size).
Thanks for the clarification!
Pedro
Hi,
FOA thanks for developing this package and the detailed replies to GitHub Issues.
I have a question commented in here (#110 (comment)).
The documentation states
cutsite_widthis "the number of nucleotides to the left and right of the cutsite location that indels can appear in.".If my target sites were of 10 nucleotides each (separated by 15 nucleotides), should I set that parameter (i) to 10 (the width of the target), (ii) to 5 (the nucleotides from the middle to the extreme of the target) or actually (iii) to 15 because it refers to the length of the linker (I suppose this is the
context_size).Thanks for the clarification!
Pedro