Removed remodeler CLI for hedpy, updated docs

Author: VisLab

CHANGELOG.md

@@ -64,21 +64,21 @@ Release 0.8.0 November 18, 2025
     - Fixed `remodel` commands: Corrected argument names, added missing parameters, fixed option conflicts.
     - Fixed `schema` commands: Corrected positional vs option argument structures for add-ids and create-ontology.
     - Added comprehensive test suite (`tests/test_cli_parameter_parity.py`) to verify CLI parameters match original parsers.
-- **JSON Schema Format Support**: Added comprehensive JSON format support for HED schemas alongside existing XML, MediaWiki, and TSV formats.
+- **JSON Schema Format Support**: Added comprehensive JSON format support for HED schemas alongside existing XML, MEDIAWIKI, and TSV formats.
   - Implemented `SchemaLoaderJSON` class for loading JSON schemas (`hed/schema/schema_io/json2schema.py`).
   - Implemented `Schema2JSON` class for exporting schemas to JSON (`hed/schema/schema_io/schema2json.py`).
   - Added JSON constants and key mappings (`hed/schema/schema_io/json_constants.py`).
   - Added `save_as_json()` and `get_as_json_string()` methods to HedSchema class.
   - JSON format uses flat tag structure with hierarchy metadata for easier programmatic access.
   - Separate units section in JSON format for improved AI/tool accessibility.
   - Placeholder structure for takes-value tags with proper attribute inheritance.
-  - Full roundtrip validation ensures JSON format produces identical validation results to XML/MediaWiki.
+  - Full roundtrip validation ensures JSON format produces identical validation results to XML/MEDIAWIKI.
 - **New BIDS Sidecar Extraction Tool**: Added `hed_extract_bids_sidecar` command-line script for extracting sidecar templates from BIDS datasets.
   - Configurable value columns and skip columns for flexible template generation.
   - Comprehensive logging support with file output and verbosity control.
   - Integrated with BidsDataset and TabularSummary classes for robust extraction.
 - **Schema Validation Enhancements**: Extended schema validation to include JSON format in roundtrip testing.
-  - Updated `hed_script_util.py` to validate all 4 schema formats (XML, MediaWiki, TSV, JSON).
+  - Updated `hed_script_util.py` to validate all 4 schema formats (XML, MEDIAWIKI, TSV, JSON).
   - Updated schema conversion script to automatically generate JSON format alongside other formats.
 - **Python Version Requirements**: Minimum Python version raised to 3.10 (dropped 3.9 support).
 - **Documentation Improvements**: Added comprehensive Google-style docstrings to all functions in `hed_script_util.py`.

README.md

@@ -79,11 +79,9 @@ hedpy extract-sidecar /path/to/dataset --suffix events
 # Validate HED schemas
 hedpy schema validate /path/to/schema.xml
 
-# Convert schema between formats (XML, MediaWiki, TSV, JSON)
+# Convert schema between formats (XML, MEDIAWIKI, TSV, JSON)
 hedpy schema convert /path/to/schema.xml
 
-# Run remodeling operations on event files
-hedpy remodel run /path/to/data /path/to/remodel_config.json
 ```
 
 **Legacy commands** (deprecated, use `hedpy` instead):

docs/_static/custom.css

@@ -1,4 +1,18 @@
-/* Custom styles for HED Python Tools Documentation - Furo Theme */
+/* Custom styles for HED Python tools Documentation - Furo Theme */
+
+/* Project name styling below logo */
+.sidebar-brand-text {
+    font-size: 1.5rem !important;
+    font-weight: 600 !important;
+    color: #0969da !important;
+    margin-top: 0.5rem !important;
+    text-align: center !important;
+}
+
+html[data-theme="dark"] .sidebar-brand-text,
+body[data-theme="dark"] .sidebar-brand-text {
+    color: #58a6ff !important;
+}
 
 /* Quick Links sidebar styling - darker gray box with proper padding */
 .sidebar-quicklinks {

docs/_templates/sidebar/brand.html

@@ -0,0 +1,6 @@
+{% extends "furo/sidebar/brand.html" %}
+
+{% block brand_content %}
+{{ super() }}
+<div class="sidebar-brand-text">HED Python tools</div>
+{% endblock brand_content %}

docs/conf.py

@@ -6,7 +6,7 @@
 # -- Project information -----------------------------------------------------
 # https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information
 
-project = "HED Python Tools"
+project = "HED Python tools"
 copyright = "2024, HED Standard"
 author = "HED Standard"
 
@@ -56,7 +56,7 @@
     "source_directory": "docs/",
 }
 
-html_title = "HED Python Tools"
+html_title = "HED Python tools"
 
 # Configure sidebar to show logo, search, navigation, and quick links
 html_sidebars = {

docs/introduction.md

@@ -24,12 +24,12 @@ The **hedtools** Python package (`hed-python` repository) provides:
 ### Related tools and resources
 
 - **[HED homepage](https://www.hedtags.org)**: Overview and links for HED
-- **[HED Schemas](https://github.com/hed-standard/hed-schemas)**: Standardized vocabularies in XML/MediaWiki/OWL formats
-- **[HED Specification](https://www.hedtags.org/hed-specification/)**: Formal specification defining HED annotation rules
-- **[HED Online Tools](https://hedtools.org/hed)**: Web-based interface requiring no programming
-- **[HED Examples](https://github.com/hed-standard/hed-examples)**: Example datasets annotated with HED
-- **[HED Resources](https://www.hedtags.org/hed-resources)**: Comprehensive tutorials and documentation
-- **[HED MATLAB Tools](https://www.hedtags.org/hed-resources/HedMatlabTools.html)**: MATLAB wrapper for Python tools
+- **[HED schemas](https://github.com/hed-standard/hed-schemas)**: Standardized vocabularies in XML/MEDIAWIKI/TSV/JSON formats
+- **[HED specification](https://www.hedtags.org/hed-specification/)**: Formal specification defining HED annotation rules
+- **[HED online tools](https://hedtools.org/hed)**: Web-based interface requiring no programming
+- **[HED examples](https://github.com/hed-standard/hed-examples)**: Example datasets annotated with HED
+- **[HED resources](https://www.hedtags.org/hed-resources)**: Comprehensive tutorials and documentation
+- **[HED MATLAB tools](https://www.hedtags.org/hed-resources/HedMatlabTools.html)**: MATLAB wrapper for Python tools
 
 ## Installation