switched the focus from datascience back to bioinformatics and added DOC fundaward

Author: Thomas-Rauter

about.md

@@ -12,7 +12,7 @@ interpretable deep learning for molecular networks.
 ## Background
 
 I hold a bachelor’s degree in Molecular Biology from Graz and a master’s degree in Biotechnology, 
-where I developed a strong interest in computational methods, particularly machine learning.
+where I developed a strong interest in computational methods and statistics.
 This passion led me to specialize in bioinformatics for my PhD research.
 
 ## Current Work
@@ -22,27 +22,12 @@ As part of my PhD, I aim to:
 - Build interpretable machine learning models for molecular networks.
 - Model CHO cells to improve biotechnological processes.
 
-## My Goal: Becoming a Full-Stack Data Scientist
-
-My ultimate goal is to become a **full-stack data scientist**, a role that encompasses not only 
-developing machine learning models but also deploying them into production and monitoring them, to 
-deliver real-world value. 
-
-A full-stack data scientist bridges the gap between model development and its practical application.
-While I love programming, machine learning, and data science, I believe that the true value comes 
-from delivering functional solutions that directly impact the business. 
-
-A model in a Jupyter notebook, no matter how sophisticated, cannot provide value to a company on its
-own. Deployed models, integrated into systems and accessible to end-users, are what drive 
-decision-making and innovation. This is why I am passionate about mastering the entire lifecycle of
-data science projects, from exploration and modeling to deployment and maintenance.
-
 
 ## Strenghts
 
 - **Autodidactic Learning**: I have a proven ability to teach myself complex 
   technical topics through independent study. With a formal background in 
-  biology, I transitioned into data science without relying on additional 
+  biology, I transitioned into bioinformatics without relying on additional 
   university coursework. By leveraging online resources, technical 
   documentation, and hands-on experimentation, I developed expertise in  
   statistical modeling, data analysis, and machine learning using Python and 
@@ -55,11 +40,8 @@ data science projects, from exploration and modeling to deployment and maintenan
   just a habit—it’s a conscious strategy. Long-term projects live or die by 
   their organization, and I make sure mine stay alive.
 - **Patience**: Structured work over time requires patience, and I’ve always had
-  a strong sense of that. Progress in research or data science is often slow 
-  and incremental, so staying focused on the bigger picture is essential. Since
-  I started studying in 2017, I’ve wanted to apply my skills to projects that 
-  have real-world impact. But I knew I first needed to build them—and only in 
-  2024, with the start of my PhD, did I feel ready to do that meaningfully.
+  a strong sense of that. Progress in research is often slow 
+  and incremental, so staying focused on the bigger picture is essential.
 - **Creativity**: I tend to think in unconventional ways, which often leads to 
   efficient or elegant solutions. For example, back in school, I’d sometimes 
   forget the "proper" formulas for math problems but still solve them using 

books.md

@@ -6,7 +6,7 @@ title: Books
 # Books
 
 Welcome to the books section of my portfolio. Here, I list the books I have 
-studied to expand my professional (data science) skills.
+studied to expand my professional skills.
 
 
 ---

courses.md

@@ -5,11 +5,8 @@ title: Courses
 
 # Courses
 
-Welcome to the courses section of my portfolio. Here, I list the 
-educational programs I have completed to expand my professional (data 
-science)  skills. While I completed many different courses throughout my 
-professional journey (for example as part of my Bachelor's and Master's 
-degrees) here I want to focus on those that are relevant for data science.
+Welcome to the courses section of my portfolio. Here, I want to highlight 
+selected courses I took to improve my professional (bioinformatics) skills.
 
 
 ## Self-Directed Learning

hardskills.md

@@ -4,38 +4,29 @@ title: Hardskills
 ---
 # Hardskills
 
-Welcome to the hardskills section of my portfolio. This is where I list the concrete technical skills I've built. Unlike soft skills, these are measurable and testable.
+Welcome to the hardskills section of my portfolio. This is where I list the 
+concrete technical skills I've built. Unlike soft skills, these are measurable 
+and testable.
 
 
 ---
 <br>
 
 ## Python programming
 
-**Overview:**  
-Core language for my data science and bioinformatics workflows. Used daily for data wrangling, statistical analysis, and modeling.
-
-**Key Strengths:**  
-- Experienced in scikit-learn, PyTorch, XGBoost  
-- Solid understanding of OOP, scripting, and automation  
-- Focus on writing reproducible, clean code (PEP8, modular design)  
-
-**Use Cases:**  
-
+Whenever I work with machine learning, I use Python as the to go language 
+for that. Further, I wrote a Python package that allows to train a special 
+type of interpretable neural network that has the architecture of a 
+molecular network (not yet made available publicly at the time of writing this).
 
 ---
 <br>
 
 ## R programming
 
-**Overview:**  
-Core language for my data science and bioinformatics workflows. Used daily for data wrangling, statistical analysis, and modeling.
-
-**Key Strengths:**  
-
-
-**Use Cases:**  
-- Programming of the SplineOmics package (see section: software-packages).
+R is the number one language in bioinformatics and therefore I use it a lot 
+in my daily work. I did a multitude of statistical analyses with it, and 
+also wrote an R package, SplineOmics (see section:  software-packages).
 
 
 

honors-and-awards.md

@@ -0,0 +1,21 @@
+---
+layout: default
+title: Honors and Awards
+---
+# Honors and Awards
+
+Welcome to the honors and awards section of my portfolio. Here, I list 
+achievements like grants, fellowships, scholarships, etc.
+
+
+---
+<br>
+
+## DOC Fund of the Austrian Academy of Sciences (ÖAW)
+
+I received a DOC Fellowship from the Austrian Academy of Sciences (ÖAW), a
+highly competitive grant supporting outstanding PhD students across all research
+disciplines. The fellowship is awarded based on academic performance, research
+potential, and project quality. I secured €147,240 in total funding, with
+€49,080 allocated for my personal research support over three years, based
+on my independently proposed research project.

index.md

@@ -7,7 +7,7 @@ title: Home
 
 ![Thomas Rauter](photo_Rauter.jpg){: style="width:150px; height:auto; border-radius:50%;" }
 
-Last updated: 24.02.2025
+Last updated: 28.06.2025
 
 Hello, I’m **Thomas Rauter**, currently a PhD researcher in **Bioinformatics** at the 
 Paris-Lodron-University of Salzburg, Austria. This website is my 
@@ -19,13 +19,6 @@ professional portfolio, where I share my work, achievements, and ongoing project
 > offering a comprehensive overview that is easy to navigate.
 
 
-## My Goal
-My goal is to become a **full-stack data scientist** working in industry, combining model 
-development, deployment, and monitoring to deliver real-world value. 
-
-To learn more about why this is my goal and what it means to me, visit the [About Me](about-me) 
-page.
-
 ## Technology Badges
 Throughout this website, you will see badges like 
 ![Python](https://img.shields.io/badge/Python-yellow?style=flat&logo=python&logoColor=white). These

softskills.md

@@ -13,18 +13,11 @@ Welcome to the softskills section of my portfolio. Here, I list the softskills I
 ## Presenting
 
 **Overview:**  
-Presenting results and topics is a key skill when someone pursues a scientific education. Since highschool, I had to make many different presentations, which includes more formal ones at seminars and conferences, but also more informal ones in group meetings
-
-**Key Strengths:**  
-- Clear story
-- No clutter and information overload
-- Clear structure: Introduction, methods, results and discussion, summary, conclusions, (and outlook)
-
-**Use Cases:**  
-- Seminars
-- Conferences
-- Group meetings
-- Classes
+Presenting results and topics is a key skill when someone pursues a scientific 
+education. Since highschool, I had to make many different presentations, which 
+includes more formal ones at seminars and conferences, but also more informal 
+ones in group meetings. I can say with confidence that over the years I 
+became a very good presenter, when I have the time to sufficiently prepare.
 
 
 ---