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MohamedOmar2020
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Use direct bioRxiv URL instead of doi.org (DOI not yet propagated)
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README.md

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If you use **sctrial** in your research, please cite:
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> Vasanthakumari P, Valencia I, Aghmiouni MR, Magana B, Omar M. **sctrial: Participant-Level Differential Analysis for Longitudinal Single-Cell Experiments.** *bioRxiv* 2026. doi:[10.64898/2026.04.02.716219](https://doi.org/10.64898/2026.04.02.716219).
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> Vasanthakumari P, Valencia I, Aghmiouni MR, Magana B, Omar M. **sctrial: Participant-Level Differential Analysis for Longitudinal Single-Cell Experiments.** *bioRxiv* 2026. [doi:10.64898/2026.04.02.716219](https://www.biorxiv.org/content/10.64898/2026.04.02.716219v1).
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```bibtex
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@article{vasanthakumari2026sctrial,

docs/source/concepts.rst

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This page describes the statistical framework underlying **sctrial**.
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For the full derivation and empirical evaluation, see the preprint:
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Vasanthakumari et al., *bioRxiv* 2026, doi:
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`10.64898/2026.04.02.716219 <https://doi.org/10.64898/2026.04.02.716219>`_.
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Vasanthakumari et al., *bioRxiv* 2026,
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`doi:10.64898/2026.04.02.716219 <https://www.biorxiv.org/content/10.64898/2026.04.02.716219v1>`_.
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The pseudoreplication problem
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docs/source/index.rst

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Vasanthakumari P, Valencia I, Aghmiouni MR, Magana B, Omar M.
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**sctrial: Participant-Level Differential Analysis for Longitudinal Single-Cell Experiments.**
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*bioRxiv* 2026. doi:`10.64898/2026.04.02.716219 <https://doi.org/10.64898/2026.04.02.716219>`_.
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*bioRxiv* 2026. `doi:10.64898/2026.04.02.716219 <https://www.biorxiv.org/content/10.64898/2026.04.02.716219v1>`_.
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.. code-block:: bibtex
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