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Planning - Determine the optimal strategy - Identify key parameters, figure out defaults for -plant and -microbe setting - Identify dependencies Setup - Add dependencies to the pipeline Documentation - Add information into core/optional parameters documentation - Update schematic to best represent the strategy Implementation - Add a process for this task Testing - Add unit tests for verifying that the feature is working correctly
No due datePlanning - Determine the optimal strategy - Identify key parameters, figure out defaults for -plant and -microbe setting - Identify dependencies Setup - Add dependencies to the pipeline Documentation - Add information into core/optional parameters documentation - Update schematic to best represent the strategy Implementation - Add a process for this task Testing - Add unit tests for verifying that the feature is working correctly
No due datePlanning - Determine the optimal strategy - Identify key parameters, figure out defaults for -plant and -microbe setting - Identify dependencies Setup - Add dependencies to the pipeline Documentation - Add information into core/optional parameters documentation - Update schematic to best represent the strategy Implementation - Add a process for this task Testing - Add unit tests for verifying that the feature is working correctly
No due datePlanning - Determine the optimal strategy - Identify key parameters, figure out defaults for -plant and -microbe setting - Identify dependencies Setup - Add dependencies to the pipeline Documentation - Add information into core/optional parameters documentation - Update schematic to best represent the strategy Implementation - Add a process for this task Testing - Add unit tests for verifying that the feature is working correctly
No due datePlanning - Determine the optimal strategy - Identify key parameters, figure out defaults for -plant and -microbe setting - Identify dependencies Setup - Add dependencies to the pipeline Documentation - Add information into core/optional parameters documentation - Update schematic to best represent the strategy Implementation - Add a process for this task Testing - Add unit tests for verifying that the feature is working correctly
No due datePlanning - Determine the optimal strategy - Identify key parameters, figure out defaults for -plant and -microbe setting - Identify dependencies Setup - Add dependencies to the pipeline Documentation - Add information into core/optional parameters documentation - Update schematic to best represent the strategy Implementation - Add a process for this task Testing - Add unit tests for verifying that the feature is working correctly
No due dateSetup - How to get the NFcore pipeline running. - Add documentation for common parameters that users would want to set. - Add documentation for optional parameters that users would not usually want to change, but might want to in special cases. Results - Add documentation for how final results are structured
No due date•1/4 issues closedIdentify a subset of RNAseq data that can be used for dev testing and demo use.
Overdue by 4 year(s)•Due by August 6, 2021- Port over scripts from GEMmaker for pulling down SRA files - Add a process for performing error correction with RCorrector (if sequences are Illumina) - Add a process that checks the Rcorrector files and removes unfixable sequences. Code comes from the scripts provided by Harvard TranscriptomeAssemblyTools: https://github.com/harvardinformatics/TranscriptomeAssemblyTools - Add a process for performing adaptor trimming with TrimGalore - Add a process that removes rRNA sequences using the SILVA database
Overdue by 4 year(s)•Due by August 27, 2021•5/5 issues closedPlanning - Determine the optimal strategy - Identify key parameters, figure out defaults for -plant and -microbe setting - Identify dependencies Setup - Add dependencies to the pipeline Documentation - Add information into core/optional parameters documentation - Update schematic to best represent the strategy Implementation - Add a process for this task Testing - Add unit tests for verifying that the feature is working correctly
Overdue by 4 year(s)•Due by August 6, 2021